Literature DB >> 27687225

Global transcriptional regulator TrmB family members in prokaryotes.

Minwook Kim1, Soyoung Park1, Sung-Jae Lee2,3.   

Abstract

Members of the TrmB family act as global transcriptional regulators for the activation or repression of sugar ABC transporters and central sugar metabolic pathways, including glycolytic, gluconeogenic, and other metabolic pathways, and also as chromosomal stabilizers in archaea. As a relatively newly classified transcriptional regulator family, there is limited experimental evidence for their role in Thermococcales, halophilic archaeon Halobacterium salinarum NRC1, and crenarchaea Sulfolobus strains, despite being one of the extending protein families in archaea. Recently, the protein structures of Pyrococcus furiosus TrmB and TrmBL2 were solved, and the transcriptomic data uncovered by microarray and ChIP-Seq were published. In the present review, recent evidence of the functional roles of TrmB family members in archaea is explained and extended to bacteria.

Entities:  

Keywords:  TrmB family members; extremophile; global transcriptional regulator; prokaryote; sugar-binding motif

Mesh:

Substances:

Year:  2016        PMID: 27687225     DOI: 10.1007/s12275-016-6362-7

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  45 in total

1.  Novel sequence-based method for identifying transcription factor binding sites in prokaryotic genomes.

Authors:  Gurmukh Sahota; Gary D Stormo
Journal:  Bioinformatics       Date:  2010-08-31       Impact factor: 6.937

2.  DNA-binding proteins and evolution of transcription regulation in the archaea.

Authors:  L Aravind; E V Koonin
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea.

Authors:  Ernesto Pérez-Rueda; Julio Collado-Vides; Lorenzo Segovia
Journal:  Comput Biol Chem       Date:  2004-12       Impact factor: 2.877

Review 4.  Archaeal transcription and its regulators.

Authors:  E Peter Geiduschek; Mohamed Ouhammouch
Journal:  Mol Microbiol       Date:  2005-06       Impact factor: 3.501

5.  ArchaeaTF: an integrated database of putative transcription factors in Archaea.

Authors:  Jinyu Wu; Shengqin Wang; Jie Bai; Liang Shi; Dong Li; Zuyuan Xu; Yuxin Niu; Jianxin Lu; Qiyu Bao
Journal:  Genomics       Date:  2007-11-26       Impact factor: 5.736

6.  Characterization of the TrmB-like protein, PF0124, a TGM-recognizing global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  Sung-Jae Lee; Melanie Surma; Sabine Seitz; Winfried Hausner; Michael Thomm; Winfried Boos
Journal:  Mol Microbiol       Date:  2007-06-21       Impact factor: 3.501

7.  Investigation of the malE promoter and MalR, a positive regulator of the maltose regulon, for an improved expression system in Sulfolobus acidocaldarius.

Authors:  Michaela Wagner; Alexander Wagner; Xiaoqing Ma; Julia Christin Kort; Abhrajyoti Ghosh; Bernadette Rauch; Bettina Siebers; Sonja-Verena Albers
Journal:  Appl Environ Microbiol       Date:  2013-11-22       Impact factor: 4.792

8.  Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus.

Authors:  Robert Reichelt; Antonia Gindner; Michael Thomm; Winfried Hausner
Journal:  BMC Genomics       Date:  2016-01-08       Impact factor: 3.969

9.  Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences.

Authors:  Horia Todor; Jessica Gooding; Olga R Ilkayeva; Amy K Schmid
Journal:  PLoS One       Date:  2015-08-18       Impact factor: 3.240

10.  The InterPro protein families database: the classification resource after 15 years.

Authors:  Alex Mitchell; Hsin-Yu Chang; Louise Daugherty; Matthew Fraser; Sarah Hunter; Rodrigo Lopez; Craig McAnulla; Conor McMenamin; Gift Nuka; Sebastien Pesseat; Amaia Sangrador-Vegas; Maxim Scheremetjew; Claudia Rato; Siew-Yit Yong; Alex Bateman; Marco Punta; Teresa K Attwood; Christian J A Sigrist; Nicole Redaschi; Catherine Rivoire; Ioannis Xenarios; Daniel Kahn; Dominique Guyot; Peer Bork; Ivica Letunic; Julian Gough; Matt Oates; Daniel Haft; Hongzhan Huang; Darren A Natale; Cathy H Wu; Christine Orengo; Ian Sillitoe; Huaiyu Mi; Paul D Thomas; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 16.971

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  3 in total

Review 1.  Global Transcriptional Programs in Archaea Share Features with the Eukaryotic Environmental Stress Response.

Authors:  Rylee K Hackley; Amy K Schmid
Journal:  J Mol Biol       Date:  2019-08-19       Impact factor: 5.469

2.  Conserved principles of transcriptional networks controlling metabolic flexibility in archaea.

Authors:  Amy K Schmid
Journal:  Emerg Top Life Sci       Date:  2018-12-14

3.  TrmB Family Transcription Factor as a Thiol-Based Regulator of Oxidative Stress Response.

Authors:  Paula Mondragon; Sungmin Hwang; Lakshmi Kasirajan; Rebecca Oyetoro; Angelina Nasthas; Emily Winters; Ricardo L Couto-Rodriguez; Amy Schmid; Julie A Maupin-Furlow
Journal:  mBio       Date:  2022-07-20       Impact factor: 7.786

  3 in total

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