Literature DB >> 27686222

Processing Time Reduction: an Application in Living Human High-Resolution Diffusion Magnetic Resonance Imaging Data.

Nicolás F Lori1,2,3,4,5, Augustin Ibañez6,7,8,9,10, Rui Lavrador11, Lucia Fonseca12,13,14, Carlos Santos11, Rui Travasso11,12, Artur Pereira15, Rosaldo Rossetti16, Nuno Sousa17, Victor Alves18.   

Abstract

High Angular Resolution Diffusion Imaging (HARDI) is a type of brain imaging that collects a very large amount of data, and if many subjects are considered then it amounts to a big data framework (e.g., the human connectome project has 20 Terabytes of data). HARDI is also becoming increasingly relevant for clinical settings (e.g., detecting early cerebral ischemic changes in acute stroke, and in pre-clinical assessment of white matter-WM anatomy using tractography). Thus, this method is becoming a routine assessment in clinical settings. In such settings, the computation time is critical, and finding forms of reducing the processing time in high computation processes such as Diffusion Spectrum Imaging (DSI), a form of HARDI data, is very relevant to increase data-processing speed. Here we analyze a method for reducing the computation time of the dMRI-based axonal orientation distribution function h by using Monte Carlo sampling-based methods for voxel selection. Results evidenced a robust reduction in required data sampling of about 50 % without losing signal's quality. Moreover, we show that the convergence to the correct value in this type of Monte Carlo HARDI/DSI data-processing has a linear improvement in data-processing speed of the ODF determination. Although further improvements are needed, our results represent a promissory step for future processing time reduction in big data.

Entities:  

Keywords:  Axonal ODF; Diffusion MRI; Monte Carlo sampling methods; Optimization; White matter

Mesh:

Year:  2016        PMID: 27686222     DOI: 10.1007/s10916-016-0594-2

Source DB:  PubMed          Journal:  J Med Syst        ISSN: 0148-5598            Impact factor:   4.460


  22 in total

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Authors:  Y Zhang; M Brady; S Smith
Journal:  IEEE Trans Med Imaging       Date:  2001-01       Impact factor: 10.048

Review 2.  Resting-state functional MR imaging: a new window to the brain.

Authors:  Frederik Barkhof; Sven Haller; Serge A R B Rombouts
Journal:  Radiology       Date:  2014-07       Impact factor: 11.105

Review 3.  The big data challenges of connectomics.

Authors:  Jeff W Lichtman; Hanspeter Pfister; Nir Shavit
Journal:  Nat Neurosci       Date:  2014-10-28       Impact factor: 24.884

4.  The geometric structure of the brain fiber pathways.

Authors:  Van J Wedeen; Douglas L Rosene; Ruopeng Wang; Guangping Dai; Farzad Mortazavi; Patric Hagmann; Jon H Kaas; Wen-Yih I Tseng
Journal:  Science       Date:  2012-03-30       Impact factor: 47.728

Review 5.  Neuroimaging signature of neuropsychiatric disorders.

Authors:  Yulia Worbe
Journal:  Curr Opin Neurol       Date:  2015-08       Impact factor: 5.710

6.  Multi-exponential signal decay from diffusion in a single compartment.

Authors:  Michelle L Milne; Mark S Conradi
Journal:  J Magn Reson       Date:  2008-12-14       Impact factor: 2.229

Review 7.  Network dysfunction in Alzheimer's disease and frontotemporal dementia: implications for psychiatry.

Authors:  Juan Zhou; William W Seeley
Journal:  Biol Psychiatry       Date:  2014-02-04       Impact factor: 13.382

8.  Understanding brains: details, intuition, and big data.

Authors:  Eve Marder
Journal:  PLoS Biol       Date:  2015-05-12       Impact factor: 8.029

9.  An anatomically comprehensive atlas of the adult human brain transcriptome.

Authors:  Michael J Hawrylycz; Ed S Lein; Angela L Guillozet-Bongaarts; Elaine H Shen; Lydia Ng; Jeremy A Miller; Louie N van de Lagemaat; Kimberly A Smith; Amanda Ebbert; Zackery L Riley; Chris Abajian; Christian F Beckmann; Amy Bernard; Darren Bertagnolli; Andrew F Boe; Preston M Cartagena; M Mallar Chakravarty; Mike Chapin; Jimmy Chong; Rachel A Dalley; Barry David Daly; Chinh Dang; Suvro Datta; Nick Dee; Tim A Dolbeare; Vance Faber; David Feng; David R Fowler; Jeff Goldy; Benjamin W Gregor; Zeb Haradon; David R Haynor; John G Hohmann; Steve Horvath; Robert E Howard; Andreas Jeromin; Jayson M Jochim; Marty Kinnunen; Christopher Lau; Evan T Lazarz; Changkyu Lee; Tracy A Lemon; Ling Li; Yang Li; John A Morris; Caroline C Overly; Patrick D Parker; Sheana E Parry; Melissa Reding; Joshua J Royall; Jay Schulkin; Pedro Adolfo Sequeira; Clifford R Slaughterbeck; Simon C Smith; Andy J Sodt; Susan M Sunkin; Beryl E Swanson; Marquis P Vawter; Derric Williams; Paul Wohnoutka; H Ronald Zielke; Daniel H Geschwind; Patrick R Hof; Stephen M Smith; Christof Koch; Seth G N Grant; Allan R Jones
Journal:  Nature       Date:  2012-09-20       Impact factor: 49.962

10.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

Authors:  T E J Behrens; H Johansen Berg; S Jbabdi; M F S Rushworth; M W Woolrich
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

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  1 in total

1.  Stroke mimic diagnoses presenting to a hyperacute stroke unit.

Authors:  Oscar Mp Jolobe
Journal:  Clin Med (Lond)       Date:  2017-02       Impact factor: 2.659

  1 in total

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