| Literature DB >> 27685260 |
Mia E Persson1, Dominic Wright1, Lina S V Roth1, Petros Batakis1, Per Jensen1.
Abstract
Unlike their wolf ancestors, dogs have unique social skills for communicating and cooperating with humans. Previously, significant heritabilities for human-directed social behaviors have been found in laboratory beagles. Here, a Genome-Wide Association Study identified two genomic regions associated with dog's human-directed social behaviors. We recorded the propensity of laboratory beagles, bred, kept and handled under standardized conditions, to initiate physical interactions with a human during an unsolvable problem-task, and 190 individuals were genotyped with an HD Canine SNP-chip. One genetic marker on chromosome 26 within the SEZ6L gene was significantly associated with time spent close to, and in physical contact with, the human. Two suggestive markers on chromosome 26, located within the ARVCF gene, were also associated with human contact seeking. Strikingly, four additional genes present in the same linkage blocks affect social abilities in humans, e.g., SEZ6L has been associated with autism and COMT affects aggression in adolescents with ADHD. This is, to our knowledge, the first genome-wide study presenting candidate genomic regions for dog sociability and inter-species communication. These results advance our understanding of dog domestication and raise the use of the dog as a novel model system for human social disorders.Entities:
Year: 2016 PMID: 27685260 PMCID: PMC5041581 DOI: 10.1038/srep33439
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Genomic inflation factor (λ) from the naïve GWAS in PLINK (λraw) and the corrected model in GEMMA (λGEMMA).
| Phenotype | λraw | λGEMMA | PVE | SE (PVE) |
|---|---|---|---|---|
| Social interactions (PC2) | 1.25 | 1.02 | 0.14 | 0.13 |
| Duration Human Proximity | 1.38 | 1.03 | 0.37 | 0.16 |
| Latency Human Proximity | 1 | 0.8 | 0 | — |
| Frequency Human Proximity | 1.11 | 1.05 | 0.05 | 0.09 |
| Duration Physical Contact | 1.25 | 1.08 | 0.10 | 0.11 |
| Latency Physical Contact | 1.43 | 1.04 | 0.13 | 0.12 |
| Frequency Physical Contact | 1.27 | 1.04 | 0.14 | 0.13 |
PVE or “chip heritability” estimates from the GEMMA analysis are also presented.
P-values for significant and suggestive SNPs from each behavioral phenotype.
| SNP | Pgenome Max (T) | Praw | Beta Praw | SE (Beta Praw) | PGEMMA | Beta PGEMMA | SE (Beta PGEMMA) |
|---|---|---|---|---|---|---|---|
| BICF2G630798942 | 1.00e-05 | 2.03e-08 | −18.40 | 3.14 | 4.87e-08 | −17.73 | 3.12 |
| BICF2G630798942 | 1.00e-05 | 2.23e-07 | −11.74 | 2.18 | 5.25e-07 | −11.25 | 2.16 |
| BICF2S23712115 | 1.00e-05 | 1.31e-07 | −12.89 | 2.35 | 7.94e-07 | −12.07 | 2.36 |
| BICF2S23712114 | 1.00e-05 | 1.31e-07 | −12.89 | 2.35 | 7.94e-07 | −12.07 | 2.36 |
Figure 1Results from Genome-Wide Association analysis on the Human Proximity behavior.
(a) Manhattan plot where * indicates the significant SNP on chromosome 26. Significance levels are shown by the red line (Bonferroni 5%) and the blue line (Bonferroni 10%). (b) Histogram showing the behavioral phenotype of each genotype for the significant SNP, separated between males and females. Error bars are ± 1 SE. (c) Linkage disequilibrium heat map of the SNPs surrounding the significant SNP.
Figure 2Results from Genome-Wide Association analysis on the Physical Contact behavior.
(a) Manhattan plot where * indicates the significant SNP on chromosome 26, (*) indicated the suggestive SNPs also on chromosome 26. Significance levels are shown by the red line (Bonferroni 5%) and the blue line (Bonferroni 10%). (b) Histogram showing the behavioral phenotype of each genotype for the suggestive SNPs, separated between males and females. Error bars are ± 1 SE. (c) Histogram showing the behavioral phenotype of each genotype for the significant SNP, separated between males and females. Error bars are ± 1 SE. (d) Linkage disequilibrium heat map of the SNPs surrounding the suggestive SNPs. See Fig. 2. (d) for the linkage disequilibrium heat map for the significant SNP.
R-squared and position within the genes for the significant and suggestive SNPs from each behavioral phenotype.
| SNP | Chr | Location (bp) | R2 SNP | R2 SNP & Covariate | Gene | Position |
|---|---|---|---|---|---|---|
| BICF2G630798942 | 26 | 20025266 | 0.156 | 0.178 | SEZ6L | Intron 9/16 |
| BICF2G630798942 | 26 | 20025266 | 0.134 | 0.220 | SEZ6L | Intron 9/16 |
| BICF2S23712115 | 26 | 29319347 | 0.139 | 0.219 | ARVCF | Intron 1/18 |
| BICF2S23712114 | 26 | 29319675 | 0.139 | 0.219 | ARVCF | Intron 1/18 |
*CanFam 3.1.
†sex as covariate.
Ethogram of the human-directed social behavior phenotypes used.
| Behavior | Type of measurements | Description |
|---|---|---|
| Human proximity | Duration | Total time (s) the dogs’ head is within its body length from the researcher. |
| Human proximity | Latency | Initial time until the dogs’ head is within its body length from the researcher. |
| Human proximity | Frequency | Total amount of times the dogs’ head is within its body length from the researcher. |
| Physical contact | Duration | Total time (s) that the dog is positioned at the researcher and in physical contact. |
| Physical contact | Latency | Initial time until the dog is positioned at the researcher and in physical contact. |
| Physical contact | Frequency | Total amount of times he dog is positioned at the researcher and in physical contact. |