Literature DB >> 27683240

Protein Crystallization in an Actuated Microfluidic Nanowell Device.

Bahige G Abdallah1, Shatabdi Roy-Chowdhury1, Raimund Fromme1, Petra Fromme1, Alexandra Ros1.   

Abstract

Protein crystallization is a major bottleneck of structure determination by X-ray crystallography, hampering the process by years in some cases. Numerous matrix screening trials using significant amounts of protein are often applied, while a systematic approach with phase diagram determination is prohibited for many proteins that can only be expressed in small amounts. Here, we demonstrate a microfluidic nanowell device implementing protein crystallization and phase diagram screening using nanoscale volumes of protein solution per trial. The device is made with cost-effective materials and is completely automated for efficient and economical experimentation. In the developed device, 170 trials can be realized with unique concentrations of protein and precipitant established by gradient generation and isolated by elastomeric valving for crystallization incubation. Moreover, this device can be further downscaled to smaller nanowell volumes and larger scale integration. The device was calibrated using a fluorescent dye and compared to a numerical model where concentrations of each trial can be quantified to establish crystallization phase diagrams. Using this device, we successfully crystallized lysozyme and C-phycocyanin, as visualized by compatible crystal imaging techniques such as bright-field microscopy, UV fluorescence, and second-order nonlinear imaging of chiral crystals. Concentrations yielding observed crystal formation were quantified and used to determine regions of the crystallization phase space for both proteins. Low sample consumption and compatibility with a variety of proteins and imaging techniques make this device a powerful tool for systematic crystallization studies.

Entities:  

Year:  2016        PMID: 27683240      PMCID: PMC5036579          DOI: 10.1021/acs.cgd.5b01748

Source DB:  PubMed          Journal:  Cryst Growth Des        ISSN: 1528-7483            Impact factor:   4.076


  53 in total

1.  The effect of temperature and solution pH on the nucleation of tetragonal lysozyme crystals.

Authors:  R A Judge; R S Jacobs; T Frazier; E H Snell; M L Pusey
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

2.  A droplet-based, composite PDMS/glass capillary microfluidic system for evaluating protein crystallization conditions by microbatch and vapor-diffusion methods with on-chip X-ray diffraction.

Authors:  Bo Zheng; Joshua D Tice; L Spencer Roach; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2004-05-03       Impact factor: 15.336

3.  Time-resolved fluorescence anisotropy imaging applied to live cells.

Authors:  Klaus Suhling; Jan Siegel; Peter M P Lanigan; Sandrine Lévêque-Fort; Stephen E D Webb; David Phillips; Daniel M Davis; Paul M W French
Journal:  Opt Lett       Date:  2004-03-15       Impact factor: 3.776

Review 4.  Commercialization of microfluidic point-of-care diagnostic devices.

Authors:  Curtis D Chin; Vincent Linder; Samuel K Sia
Journal:  Lab Chip       Date:  2012-02-17       Impact factor: 6.799

5.  Macromolecular crystallization with microfluidic free-interface diffusion.

Authors:  Brent Segelke
Journal:  Expert Rev Proteomics       Date:  2005-04       Impact factor: 3.940

6.  Measurement of cell migration in response to an evolving radial chemokine gradient triggered by a microvalve.

Authors:  Charles W Frevert; Gregory Boggy; Thomas M Keenan; Albert Folch
Journal:  Lab Chip       Date:  2006-05-12       Impact factor: 6.799

7.  Rapid Prototyping of Microfluidic Systems in Poly(dimethylsiloxane).

Authors:  D C Duffy; J C McDonald; O J Schueller; G M Whitesides
Journal:  Anal Chem       Date:  1998-12-01       Impact factor: 6.986

8.  Insulator-based dielectrophoresis with β-galactosidase in nanostructured devices.

Authors:  Asuka Nakano; Fernanda Camacho-Alanis; Alexandra Ros
Journal:  Analyst       Date:  2015-02-07       Impact factor: 4.616

9.  Structure of the Angiotensin receptor revealed by serial femtosecond crystallography.

Authors:  Haitao Zhang; Hamiyet Unal; Cornelius Gati; Gye Won Han; Wei Liu; Nadia A Zatsepin; Daniel James; Dingjie Wang; Garrett Nelson; Uwe Weierstall; Michael R Sawaya; Qingping Xu; Marc Messerschmidt; Garth J Williams; Sébastien Boutet; Oleksandr M Yefanov; Thomas A White; Chong Wang; Andrii Ishchenko; Kalyan C Tirupula; Russell Desnoyer; Jesse Coe; Chelsie E Conrad; Petra Fromme; Raymond C Stevens; Vsevolod Katritch; Sadashiva S Karnik; Vadim Cherezov
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

10.  Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography.

Authors:  Linda C Johansson; David Arnlund; Gergely Katona; Thomas A White; Anton Barty; Daniel P DePonte; Robert L Shoeman; Cecilia Wickstrand; Amit Sharma; Garth J Williams; Andrew Aquila; Michael J Bogan; Carl Caleman; Jan Davidsson; R Bruce Doak; Matthias Frank; Raimund Fromme; Lorenzo Galli; Ingo Grotjohann; Mark S Hunter; Stephan Kassemeyer; Richard A Kirian; Christopher Kupitz; Mengning Liang; Lukas Lomb; Erik Malmerberg; Andrew V Martin; Marc Messerschmidt; Karol Nass; Lars Redecke; M Marvin Seibert; Jennie Sjöhamn; Jan Steinbrener; Francesco Stellato; Dingjie Wang; Weixaio Y Wahlgren; Uwe Weierstall; Sebastian Westenhoff; Nadia A Zatsepin; Sébastien Boutet; John C H Spence; Ilme Schlichting; Henry N Chapman; Petra Fromme; Richard Neutze
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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  3 in total

1.  Bulk double emulsification for flow cytometric analysis of microfluidic droplets.

Authors:  David J Sukovich; Samuel C Kim; Noorsher Ahmed; Adam R Abate
Journal:  Analyst       Date:  2017-12-04       Impact factor: 4.616

2.  Machine learning-based protein crystal detection for monitoring of crystallization processes enabled with large-scale synthetic data sets of photorealistic images.

Authors:  Daniel Bischoff; Brigitte Walla; Dirk Weuster-Botz
Journal:  Anal Bioanal Chem       Date:  2022-06-04       Impact factor: 4.478

3.  Protein crystallization: Eluding the bottleneck of X-ray crystallography.

Authors:  Joshua Holcomb; Nicholas Spellmon; Yingxue Zhang; Maysaa Doughan; Chunying Li; Zhe Yang
Journal:  AIMS Biophys       Date:  2017-09-26
  3 in total

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