Literature DB >> 27683189

Acquiring and processing ultrafast biomolecular 2D NMR experiments using a referenced-based correction.

Amir Seginer1, Gregory L Olsen1, Lucio Frydman2.   

Abstract

Thanks to their special spatiotemporal encoding/decoding scheme, ultrafast (UF) NMR sequences can deliver arbitrary 2D spectra following a single excitation. Regardless of their nature, these sequences have in common their tracing of a path in the [Formula: see text]-[Formula: see text] plane, that will deliver the spectrum being sought after a 1D Fourier transformation versus [Formula: see text]. This need to simultaneously digitize two domains, tends to impose bandwidth limitations along all spectral axes. Along the [Formula: see text]/[Formula: see text] dimension this problem is exacerbated by the fact that odd and even time points are not equispaced, and by additional artifacts such as time shifts between time points sampled while under the action of positive and negative decoding gradients. As a result, odd and even [Formula: see text] points are typically Fourier transformed separately, halving the potential spectral width along this dimension. While this halving of the [Formula: see text] span can be overcome by an interlaced Fourier transform, this post-processing is seldom used because of its sensitivity to hardware inaccuracies requiring even finer corrections of the even/odd [Formula: see text] data points. These corrections have so far been done manually, but are challenging to implement when dealing with low signal-to-noise ratio signals like those associated with biomolecular NMR experiments. This study introduces an algorithm for an automatic correction of all even/odd ultrafast NMR inconsistencies, based on the acquisition of a reference scan on the solvent. This algorithm was verified experimentally using an [Formula: see text]-[Formula: see text] UF-HSQC variant on ubiquitin at 600 MHz. Features of this method as well as of the interlaced Fourier transformation in general, are discussed.

Keywords:  Echo planar spectroscopic imaging; Interlaced Fourier transformation; Protein NMR; Sensitivity enhancement; Signal-to-noise ratio; Ultrafast 2D NMR

Mesh:

Year:  2016        PMID: 27683189     DOI: 10.1007/s10858-016-0063-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  25 in total

1.  Principles and features of single-scan two-dimensional NMR spectroscopy.

Authors:  Lucio Frydman; Adonis Lupulescu; Tali Scherf
Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

2.  Single-scan multidimensional magnetic resonance.

Authors:  Assaf Tal; Lucio Frydman
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-04-22       Impact factor: 9.795

3.  Interlaced Fourier transformation of ultrafast 2D NMR data.

Authors:  Mor Mishkovsky; Lucio Frydman
Journal:  J Magn Reson       Date:  2005-04       Impact factor: 2.229

4.  Principles and progress in ultrafast multidimensional nuclear magnetic resonance.

Authors:  Mor Mishkovsky; Lucio Frydman
Journal:  Annu Rev Phys Chem       Date:  2009       Impact factor: 12.703

5.  Ultrafast 2D COSY with constant-time phase-modulated spatial encoding.

Authors:  Can Wu; Mingfang Zhao; Shuhui Cai; Yulan Lin; Zhong Chen
Journal:  J Magn Reson       Date:  2010-02-12       Impact factor: 2.229

6.  Improved sensitivity of HSQC spectra of exchanging protons at short interscan delays using a new fast HSQC (FHSQC) detection scheme that avoids water saturation.

Authors:  S Mori; C Abeygunawardana; M O Johnson; P C van Zijl
Journal:  J Magn Reson B       Date:  1995-07

7.  Three-dimensional echo-planar MR spectroscopic imaging at short echo times in the human brain.

Authors:  S Posse; C DeCarli; D Le Bihan
Journal:  Radiology       Date:  1994-09       Impact factor: 11.105

8.  Compressed sensing and the reconstruction of ultrafast 2D NMR data: Principles and biomolecular applications.

Authors:  Yoav Shrot; Lucio Frydman
Journal:  J Magn Reson       Date:  2011-01-21       Impact factor: 2.229

9.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

Review 10.  Ultrafast 2D NMR: an emerging tool in analytical spectroscopy.

Authors:  Patrick Giraudeau; Lucio Frydman
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2014       Impact factor: 10.745

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