Literature DB >> 27677493

Heritability of targeted gene modifications induced by plant-optimized CRISPR systems.

Yanfei Mao1, Jose Ramon Botella2, Jian-Kang Zhu3,4.   

Abstract

The Streptococcus-derived CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)/Cas9 (CRISPR-associated protein 9) system has emerged as a very powerful tool for targeted gene modifications in many living organisms including plants. Since the first application of this system for plant gene modification in 2013, this RNA-guided DNA endonuclease system has been extensively engineered to meet the requirements of functional genomics and crop trait improvement in a number of plant species. Given its short history, the emphasis of many studies has been the optimization of the technology to improve its reliability and efficiency to generate heritable gene modifications in plants. Here we review and analyze the features of customized CRISPR/Cas9 systems developed for plant genetic studies and crop breeding. We focus on two essential aspects: the heritability of gene modifications induced by CRISPR/Cas9 and the factors affecting its efficiency, and we provide strategies for future design of systems with improved activity and heritability in plants.

Keywords:  CRISPR-Cas; Gene editing; Inheritance; Mutagenesis; sgRNA

Mesh:

Year:  2016        PMID: 27677493     DOI: 10.1007/s00018-016-2380-1

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  140 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Os8N3 is a host disease-susceptibility gene for bacterial blight of rice.

Authors:  Bing Yang; Akiko Sugio; Frank F White
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-23       Impact factor: 11.205

3.  Targeted genome modification of crop plants using a CRISPR-Cas system.

Authors:  Qiwei Shan; Yanpeng Wang; Jun Li; Yi Zhang; Kunling Chen; Zhen Liang; Kang Zhang; Jinxing Liu; Jianzhong Jeff Xi; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2013-08       Impact factor: 54.908

4.  Efficient targeted mutagenesis in potato by the CRISPR/Cas9 system.

Authors:  Shaohui Wang; Shuaibin Zhang; Wanxing Wang; Xingyao Xiong; Fanrong Meng; Xia Cui
Journal:  Plant Cell Rep       Date:  2015-06-17       Impact factor: 4.570

5.  Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated9 system.

Authors:  Christopher Brooks; Vladimir Nekrasov; Zachary B Lippman; Joyce Van Eck
Journal:  Plant Physiol       Date:  2014-09-15       Impact factor: 8.340

6.  DNA replicons for plant genome engineering.

Authors:  Nicholas J Baltes; Javier Gil-Humanes; Tomas Cermak; Paul A Atkins; Daniel F Voytas
Journal:  Plant Cell       Date:  2014-01-17       Impact factor: 11.277

7.  Functional replacement of the tobacco rattle virus cysteine-rich protein by pathogenicity proteins from unrelated plant viruses.

Authors:  Hui Liu; Brian Reavy; Maud Swanson; Stuart A MacFarlane
Journal:  Virology       Date:  2002-07-05       Impact factor: 3.616

8.  Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells.

Authors:  Lior Nissim; Samuel D Perli; Alexandra Fridkin; Pablo Perez-Pinera; Timothy K Lu
Journal:  Mol Cell       Date:  2014-05-15       Impact factor: 17.970

9.  GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases.

Authors:  Shengdar Q Tsai; Zongli Zheng; Nhu T Nguyen; Matthew Liebers; Ved V Topkar; Vishal Thapar; Nicolas Wyvekens; Cyd Khayter; A John Iafrate; Long P Le; Martin J Aryee; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-12-16       Impact factor: 54.908

10.  High-frequency modification of plant genes using engineered zinc-finger nucleases.

Authors:  Jeffrey A Townsend; David A Wright; Ronnie J Winfrey; Fengli Fu; Morgan L Maeder; J Keith Joung; Daniel F Voytas
Journal:  Nature       Date:  2009-04-29       Impact factor: 49.962

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  15 in total

1.  Efficient genome editing of Brassica campestris based on the CRISPR/Cas9 system.

Authors:  Xingpeng Xiong; Weimiao Liu; Jianxia Jiang; Liai Xu; Li Huang; Jiashu Cao
Journal:  Mol Genet Genomics       Date:  2019-05-25       Impact factor: 3.291

2.  A role of OsROS1 in aleurone development and nutrient improvement in rice.

Authors:  Zhaobo Lang; Zhizhong Gong
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-01       Impact factor: 11.205

3.  Mutant selection in the self-incompatible plant radish (Raphanus sativus L. var. sativus) using two-step TILLING.

Authors:  Kaori Kohzuma; Motoko Chiba; Soichiro Nagano; Toyoaki Anai; Miki U Ueda; Riichi Oguchi; Kazumasa Shirai; Kousuke Hanada; Kouki Hikosaka; Nobuharu Fujii
Journal:  Breed Sci       Date:  2017-05-31       Impact factor: 2.086

4.  Manipulating plant RNA-silencing pathways to improve the gene editing efficiency of CRISPR/Cas9 systems.

Authors:  Yanfei Mao; Xiaoxuan Yang; Yiting Zhou; Zhengjing Zhang; Jose Ramon Botella; Jian-Kang Zhu
Journal:  Genome Biol       Date:  2018-09-28       Impact factor: 13.583

5.  Now for the hard ones: is there a limit on CRISPR genome editing in crops?

Authors:  Jose R Botella
Journal:  J Exp Bot       Date:  2019-02-05       Impact factor: 6.992

Review 6.  Modern Trends in Plant Genome Editing: An Inclusive Review of the CRISPR/Cas9 Toolbox.

Authors:  Ali Razzaq; Fozia Saleem; Mehak Kanwal; Ghulam Mustafa; Sumaira Yousaf; Hafiz Muhammad Imran Arshad; Muhammad Khalid Hameed; Muhammad Sarwar Khan; Faiz Ahmad Joyia
Journal:  Int J Mol Sci       Date:  2019-08-19       Impact factor: 5.923

7.  Targeted Mutagenesis of the Rice FW 2.2-Like Gene Family Using the CRISPR/Cas9 System Reveals OsFWL4 as a Regulator of Tiller Number and Plant Yield in Rice.

Authors:  Qingsong Gao; Gang Li; Hui Sun; Ming Xu; Huanhuan Wang; Jianhui Ji; Di Wang; Caiyong Yuan; Xiangxiang Zhao
Journal:  Int J Mol Sci       Date:  2020-01-26       Impact factor: 5.923

8.  Simplified adenine base editors improve adenine base editing efficiency in rice.

Authors:  Kai Hua; Xiaoping Tao; Weiyi Liang; Zhaoxia Zhang; Runyu Gou; Jian-Kang Zhu
Journal:  Plant Biotechnol J       Date:  2019-09-19       Impact factor: 9.803

9.  A simple and cost-effective method for screening of CRISPR/Cas9-induced homozygous/biallelic mutants.

Authors:  Jinggong Guo; Kun Li; Lifeng Jin; Rui Xu; Kaiting Miao; Fengbo Yang; Chaoya Qi; Lin Zhang; Jose R Botella; Ran Wang; Yuchen Miao
Journal:  Plant Methods       Date:  2018-05-29       Impact factor: 4.993

10.  Efficient knockout of phytoene desaturase gene using CRISPR/Cas9 in melon.

Authors:  Isidre Hooghvorst; Camilo López-Cristoffanini; Salvador Nogués
Journal:  Sci Rep       Date:  2019-11-19       Impact factor: 4.379

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