Literature DB >> 27676434

Chromatin Control of Developmental Dynamics and Plasticity.

Matteo Perino1, Gert Jan C Veenstra2.   

Abstract

Chromatin structure is intimately connected with gene expression and cell identity. Here we review recent advances in the field and discuss how establishment of cell identity during development is accompanied by large-scale remodeling of the epigenetic landscape and how this remodeling drives and supports lineage specification and maintenance. We discuss maternal control of the early embryonic epigenetic landscape, selective usage of enhancer clusters via 3D chromatin contacts leading to activation of transcription factor networks, and conserved regulation of developmental pathways by specific DNA demethylation of key regulatory regions. Together, these processes establish an epigenetic framework regulating different phases of embryonic development.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27676434     DOI: 10.1016/j.devcel.2016.08.004

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  45 in total

1.  Opposing functions of H2BK120 ubiquitylation and H3K79 methylation in the regulation of pluripotency by the Paf1 complex.

Authors:  Alexandros Strikoudis; Charalampos Lazaris; Panagiotis Ntziachristos; Aristotelis Tsirigos; Iannis Aifantis
Journal:  Cell Cycle       Date:  2017       Impact factor: 4.534

Review 2.  Genome-wide analysis of chromatin accessibility using ATAC-seq.

Authors:  Tanvi Shashikant; Charles A Ettensohn
Journal:  Methods Cell Biol       Date:  2018-12-21       Impact factor: 1.441

Review 3.  Organelle size scaling over embryonic development.

Authors:  Chase C Wesley; Sampada Mishra; Daniel L Levy
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2020-01-31       Impact factor: 5.814

4.  Regeneration after acute kidney injury requires PTIP-mediated epigenetic modifications.

Authors:  Abdul Soofi; Ana P Kutschat; Mohammad Azam; Ann M Laszczyk; Gregory R Dressler
Journal:  JCI Insight       Date:  2020-02-13

Review 5.  Epigenetic plasticity and the hallmarks of cancer.

Authors:  William A Flavahan; Elizabeth Gaskell; Bradley E Bernstein
Journal:  Science       Date:  2017-07-21       Impact factor: 47.728

6.  Lysine-specific demethylase-2 is distinctively involved in brown and beige adipogenic differentiation.

Authors:  Ryuta Takase; Shinjiro Hino; Katsuya Nagaoka; Kotaro Anan; Kensaku Kohrogi; Hirotaka Araki; Yuko Hino; Akihisa Sakamoto; Thomas B Nicholson; Taiping Chen; Mitsuyoshi Nakao
Journal:  FASEB J       Date:  2019-01-25       Impact factor: 5.191

7.  Chromatin accessibility and histone acetylation in the regulation of competence in early development.

Authors:  Melody Esmaeili; Shelby A Blythe; John W Tobias; Kai Zhang; Jing Yang; Peter S Klein
Journal:  Dev Biol       Date:  2020-02-28       Impact factor: 3.582

8.  The RNA Helicase DDX6 Controls Cellular Plasticity by Modulating P-Body Homeostasis.

Authors:  Bruno Di Stefano; En-Ching Luo; Chuck Haggerty; Stefan Aigner; Jocelyn Charlton; Justin Brumbaugh; Fei Ji; Inés Rabano Jiménez; Katie J Clowers; Aaron J Huebner; Kendell Clement; Inna Lipchina; Marit A C de Kort; Anthony Anselmo; John Pulice; Mattia F M Gerli; Hongcang Gu; Steven P Gygi; Ruslan I Sadreyev; Alexander Meissner; Gene W Yeo; Konrad Hochedlinger
Journal:  Cell Stem Cell       Date:  2019-10-03       Impact factor: 24.633

9.  Global analysis of histone modifications and long-range chromatin interactions revealed the differential cistrome changes and novel transcriptional players in human dilated cardiomyopathy.

Authors:  Chia-Feng Liu; Armen Abnousi; Peter Bazeley; Ying Ni; Michael Morley; Christine S Moravec; Ming Hu; W H Wilson Tang
Journal:  J Mol Cell Cardiol       Date:  2020-06-10       Impact factor: 5.000

10.  Stress-induced transcriptional memory accelerates promoter-proximal pause release and decelerates termination over mitotic divisions.

Authors:  Anniina Vihervaara; Dig Bijay Mahat; Samu V Himanen; Malin A H Blom; John T Lis; Lea Sistonen
Journal:  Mol Cell       Date:  2021-03-29       Impact factor: 17.970

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