Literature DB >> 27673340

Role of Asn112 in a Light-Driven Sodium Ion-Pumping Rhodopsin.

Rei Abe-Yoshizumi1, Keiichi Inoue1,2,3,4, Hideaki E Kato5, Osamu Nureki5, Hideki Kandori1,2.   

Abstract

Light-driven outward sodium-pumping rhodopsin (NaR) was recently found in marine bacteria. Krokinobacter eikastus rhodopsin 2 (KR2) actively transports sodium and lithium ions in NaCl and LiCl, respectively, while it pumps protons in KCl. NaR has a conserved NDQ (N112, D116, and Q123 in KR2) motif, and previous studies suggested an important role for N112 in the function of KR2. Here we replaced N112 with 19 different amino acids and studied the molecular properties of the mutants. All mutants exhibited absorption bands from a protonated Schiff base in the λmax range from 508 to 531 nm upon heterologous expression in Escherichia coli, whose ion-pumping activity was measured using pH electrodes. The function of these mutants was classified into three phenotypes: wild-type (WT)-like Na+/H+ compatible pump, exclusive H+ pump, and no pump. Among the 19 mutants, only N112D, -G, -S, and -T showed light-driven Na+ pump activity, N112A, -C, -P, -V, -E, -Q, -I, -L, -M, -F, and -W were exclusively H+ pumps, and N112H, -K, -Y, and -R exhibited no pump activity. The mutants of the no pump function lack a blue-shifted M intermediate, indicating that Schiff base deprotonation is a prerequisite for Na+ and H+ pumps. In contrast, the subsequent red-shifted O intermediate was observed for WT and N112V but absent for N112T and N112A, suggesting that observation of this intermediate depends on kinetics. Although N112D, -G, -S, and -T are able to pump Na+, they also pump H+ in NaCl, where Na+ and H+ pumps compete with each other because of the decreased Na+ uptake efficiency. From these facts, an exclusive Na+ pump in NaCl exists only in WT. We conclude that N112 is one of the functional determinants of NaR.

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Year:  2016        PMID: 27673340     DOI: 10.1021/acs.biochem.6b00741

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  4 in total

1.  Energetics and dynamics of a light-driven sodium-pumping rhodopsin.

Authors:  Carl-Mikael Suomivuori; Ana P Gamiz-Hernandez; Dage Sundholm; Ville R I Kaila
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-13       Impact factor: 11.205

2.  Femtosecond-to-millisecond structural changes in a light-driven sodium pump.

Authors:  David Ehrenberg; Tobias Weinert; Petr Skopintsev; Daniel James; Rajiv K Kar; Philip J M Johnson; Dmitry Ozerov; Antonia Furrer; Isabelle Martiel; Florian Dworkowski; Karol Nass; Gregor Knopp; Claudio Cirelli; Christopher Arrell; Dardan Gashi; Sandra Mous; Maximilian Wranik; Thomas Gruhl; Demet Kekilli; Steffen Brünle; Xavier Deupi; Gebhard F X Schertler; Roger M Benoit; Valerie Panneels; Przemyslaw Nogly; Igor Schapiro; Christopher Milne; Joachim Heberle; Jörg Standfuss
Journal:  Nature       Date:  2020-05-20       Impact factor: 49.962

3.  Structure and mechanisms of sodium-pumping KR2 rhodopsin.

Authors:  Kirill Kovalev; Vitaly Polovinkin; Ivan Gushchin; Alexey Alekseev; Vitaly Shevchenko; Valentin Borshchevskiy; Roman Astashkin; Taras Balandin; Dmitry Bratanov; Svetlana Vaganova; Alexander Popov; Vladimir Chupin; Georg Büldt; Ernst Bamberg; Valentin Gordeliy
Journal:  Sci Adv       Date:  2019-04-10       Impact factor: 14.136

4.  Understanding Colour Tuning Rules and Predicting Absorption Wavelengths of Microbial Rhodopsins by Data-Driven Machine-Learning Approach.

Authors:  Masayuki Karasuyama; Keiichi Inoue; Ryoko Nakamura; Hideki Kandori; Ichiro Takeuchi
Journal:  Sci Rep       Date:  2018-10-22       Impact factor: 4.379

  4 in total

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