Literature DB >> 27671933

BASIC: A Simple and Accurate Modular DNA Assembly Method.

Marko Storch1, Arturo Casini1, Ben Mackrow1, Tom Ellis2, Geoff S Baldwin3.   

Abstract

Biopart Assembly Standard for Idempotent Cloning (BASIC) is a simple, accurate, and robust DNA assembly method. The method is based on linker-mediated DNA assembly and provides highly accurate DNA assembly with 99 % correct assemblies for four parts and 90 % correct assemblies for seven parts [1]. The BASIC standard defines a single entry vector for all parts flanked by the same prefix and suffix sequences and its idempotent nature means that the assembled construct is returned in the same format. Once a part has been adapted into the BASIC format it can be placed at any position within a BASIC assembly without the need for reformatting. This allows laboratories to grow comprehensive and universal part libraries and to share them efficiently. The modularity within the BASIC framework is further extended by the possibility of encoding ribosomal binding sites (RBS) and peptide linker sequences directly on the linkers used for assembly. This makes BASIC a highly versatile library construction method for combinatorial part assembly including the construction of promoter, RBS, gene variant, and protein-tag libraries. In comparison with other DNA assembly standards and methods, BASIC offers a simple robust protocol; it relies on a single entry vector, provides for easy hierarchical assembly, and is highly accurate for up to seven parts per assembly round [2].

Entities:  

Keywords:  Combinatorial; DNA assembly; Hierarchical; Idempotent; Pathway engineering

Mesh:

Year:  2017        PMID: 27671933     DOI: 10.1007/978-1-4939-6343-0_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

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Authors:  Matthias Christen; Luca Del Medico; Heinz Christen; Beat Christen
Journal:  PLoS One       Date:  2017-05-22       Impact factor: 3.240

2.  SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts.

Authors:  Esteban Martínez-García; Angel Goñi-Moreno; Bryan Bartley; James McLaughlin; Lucas Sánchez-Sampedro; Héctor Pascual Del Pozo; Clara Prieto Hernández; Ada Serena Marletta; Davide De Lucrezia; Guzmán Sánchez-Fernández; Sofía Fraile; Víctor de Lorenzo
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

3.  Synthetic biology and bioelectrochemical tools for electrogenetic system engineering.

Authors:  Joshua M Lawrence; Yutong Yin; Paolo Bombelli; Alberto Scarampi; Marko Storch; Laura T Wey; Alicia Climent-Catala; Geoff S Baldwin; Danny O'Hare; Christopher J Howe; Jenny Z Zhang; Thomas E Ouldridge; Rodrigo Ledesma-Amaro
Journal:  Sci Adv       Date:  2022-05-04       Impact factor: 14.957

4.  A modular RNA interference system for multiplexed gene regulation.

Authors:  Ari Dwijayanti; Marko Storch; Guy-Bart Stan; Geoff S Baldwin
Journal:  Nucleic Acids Res       Date:  2022-02-22       Impact factor: 16.971

  4 in total

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