Literature DB >> 27670842

Genetically encoded photocrosslinkers for identifying and mapping protein-protein interactions in living cells.

Yi Yang1, Haiping Song1, Peng R Chen2,3.   

Abstract

Protein-protein interactions (PPIs) play pivotal roles in regulation of many biological processes. Conventional methods are capable of investigating stable and strong interactions within protein complexes, but remain difficult for studying dynamic, transient, and weak PPIs. Herein we review photo-affinity unnatural amino acids that can be site-specifically incorporated into a protein of interest to covalently trap noncovalent PPIs under living conditions. A newly developed cleavable photocrosslinker from our group will also be introduced, which facilitated the prey-bait separation for better enrichment and identification of photocrosslinked PPI complexes.
© 2016 IUBMB Life, 68(11):879-886, 2016. © 2016 International Union of Biochemistry and Molecular Biology.

Keywords:  genetic code expansion; interaction dynamics; interaction interface; photocrosslinker; protein-protein interactions

Mesh:

Substances:

Year:  2016        PMID: 27670842     DOI: 10.1002/iub.1560

Source DB:  PubMed          Journal:  IUBMB Life        ISSN: 1521-6543            Impact factor:   3.885


  10 in total

Review 1.  Biogenesis, quality control, and structural dynamics of proteins as explored in living cells via site-directed photocrosslinking.

Authors:  Xinmiao Fu; Zengyi Chang
Journal:  Protein Sci       Date:  2019-05-10       Impact factor: 6.725

2.  Electron-deficient p-benzoyl-l-phenylalanine derivatives increase covalent chemical capture yields for protein-protein interactions.

Authors:  Cassandra M Joiner; Meghan E Breen; Anna K Mapp
Journal:  Protein Sci       Date:  2019-04-29       Impact factor: 6.725

3.  Genetically encoded releasable photo-cross-linking strategies for studying protein-protein interactions in living cells.

Authors:  Yi Yang; Haiping Song; Dan He; Shuai Zhang; Shizhong Dai; Xiao Xie; Shixian Lin; Ziyang Hao; Huangtao Zheng; Peng R Chen
Journal:  Nat Protoc       Date:  2017-09-21       Impact factor: 13.491

4.  Spatiotemporal Control of Biology: Synthetic Photochemistry Toolbox with Far-Red and Near-Infrared Light.

Authors:  Shang Jia; Ellen M Sletten
Journal:  ACS Chem Biol       Date:  2021-09-13       Impact factor: 5.100

Review 5.  Current advances of carbene-mediated photoaffinity labeling in medicinal chemistry.

Authors:  Sha-Sha Ge; Biao Chen; Yuan-Yuan Wu; Qing-Su Long; Yong-Liang Zhao; Pei-Yi Wang; Song Yang
Journal:  RSC Adv       Date:  2018-08-20       Impact factor: 4.036

Review 6.  Photo-affinity labeling (PAL) in chemical proteomics: a handy tool to investigate protein-protein interactions (PPIs).

Authors:  Dhiraj P Murale; Seong Cheol Hong; Md Mamunul Haque; Jun-Seok Lee
Journal:  Proteome Sci       Date:  2017-06-24       Impact factor: 2.480

Review 7.  Advances and Challenges in Cell-Free Incorporation of Unnatural Amino Acids Into Proteins.

Authors:  Wei Gao; Eunhee Cho; Yingying Liu; Yuan Lu
Journal:  Front Pharmacol       Date:  2019-05-29       Impact factor: 5.810

8.  Inducible orthogonal aminoacylation demonstrates that charging is required for mitochondrial tRNA import in Trypanosoma brucei.

Authors:  Jonathan L Huot; Shikha Shikha; André Schneider
Journal:  Sci Rep       Date:  2019-07-25       Impact factor: 4.379

9.  Substrate Profiling of Mitochondrial Caseinolytic Protease P via a Site-Specific Photocrosslinking Approach.

Authors:  Tuan-Anh Nguyen; Thomas F Gronauer; Timon Nast-Kolb; Stephan A Sieber; Kathrin Lang
Journal:  Angew Chem Int Ed Engl       Date:  2022-01-14       Impact factor: 16.823

Review 10.  New technologies to analyse protein function: an intrinsic disorder perspective.

Authors:  Vladimir N Uversky
Journal:  F1000Res       Date:  2020-02-10
  10 in total

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