Literature DB >> 27669114

Rabs and GAPs in starvation-induced autophagy.

Christopher A Lamb1, Andrea Longatti1, Sharon A Tooze1.   

Abstract

Formation of autophagosomes requires vesicular trafficking from virtually every subcellular compartment to the formation site. This traffic must be tightly regulated but also adaptable as different membrane compartments will contribute varying amounts of membrane, lipids and proteins to the forming autophagosome depending on the stimulus. In mammalian cells, efforts to understand how autophagosomes form have been focused on the role of Rab proteins in autophagy. Rab proteins provide specificity through their interaction with coat proteins, vesicle tethers and SNAREs. Recent data emerging from these studies have defined a subset of Rab proteins and their regulators, the RabGAPS (GTPase activating proteins) in both autophagosome formation and maturation. This review will focus on the role of a set of RabGAPs shown to regulate autophagy, in particular TBC1D14, and its interactors, RAB11 and TRAPPIII. Through our studies on TBC1D14, we have gained an understanding of the contribution of membrane from the recycling endosome, and the role of TRAPPIII in maintaining ATG (Autophagy protein) 9 trafficking in autophagosome formation.

Entities:  

Keywords:  ATG9; Rab proteins; TBC domains; TRAPPIII; autophagosome; autophagy

Mesh:

Substances:

Year:  2016        PMID: 27669114      PMCID: PMC5129906          DOI: 10.1080/21541248.2016.1220779

Source DB:  PubMed          Journal:  Small GTPases        ISSN: 2154-1248


  28 in total

1.  Trs85 directs a Ypt1 GEF, TRAPPIII, to the phagophore to promote autophagy.

Authors:  Molly A Lynch-Day; Deepali Bhandari; Shekar Menon; Ju Huang; Huaqing Cai; Clinton R Bartholomew; John H Brumell; Susan Ferro-Novick; Daniel J Klionsky
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-07       Impact factor: 11.205

2.  Rab conversion as a mechanism of progression from early to late endosomes.

Authors:  Jochen Rink; Eric Ghigo; Yannis Kalaidzidis; Marino Zerial
Journal:  Cell       Date:  2005-09-09       Impact factor: 41.582

3.  Atg101, a novel mammalian autophagy protein interacting with Atg13.

Authors:  Nao Hosokawa; Takahiro Sasaki; Shun-ichiro Iemura; Tohru Natsume; Taichi Hara; Noboru Mizushima
Journal:  Autophagy       Date:  2009-10-18       Impact factor: 16.016

4.  Golgi-resident small GTPase Rab33B interacts with Atg16L and modulates autophagosome formation.

Authors:  Takashi Itoh; Naonobu Fujita; Eiko Kanno; Akitsugu Yamamoto; Tamotsu Yoshimori; Mitsunori Fukuda
Journal:  Mol Biol Cell       Date:  2008-04-30       Impact factor: 4.138

5.  Atg9 vesicles are an important membrane source during early steps of autophagosome formation.

Authors:  Hayashi Yamamoto; Soichiro Kakuta; Tomonobu M Watanabe; Akira Kitamura; Takayuki Sekito; Chika Kondo-Kakuta; Rie Ichikawa; Masataka Kinjo; Yoshinori Ohsumi
Journal:  J Cell Biol       Date:  2012-07-23       Impact factor: 10.539

Review 6.  Atg8: an autophagy-related ubiquitin-like protein family.

Authors:  Tomer Shpilka; Hilla Weidberg; Shmuel Pietrokovski; Zvulun Elazar
Journal:  Genome Biol       Date:  2011-07-27       Impact factor: 13.583

7.  WIPI2 links LC3 conjugation with PI3P, autophagosome formation, and pathogen clearance by recruiting Atg12-5-16L1.

Authors:  Hannah C Dooley; Minoo Razi; Hannah E J Polson; Stephen E Girardin; Michael I Wilson; Sharon A Tooze
Journal:  Mol Cell       Date:  2014-06-19       Impact factor: 17.970

8.  TBC1D14 regulates autophagy via the TRAPP complex and ATG9 traffic.

Authors:  Christopher A Lamb; Stefanie Nühlen; Delphine Judith; David Frith; Ambrosius P Snijders; Christian Behrends; Sharon A Tooze
Journal:  EMBO J       Date:  2015-12-28       Impact factor: 11.598

9.  Dynamic association of the ULK1 complex with omegasomes during autophagy induction.

Authors:  Eleftherios Karanasios; Eloise Stapleton; Maria Manifava; Takeshi Kaizuka; Noboru Mizushima; Simon A Walker; Nicholas T Ktistakis
Journal:  J Cell Sci       Date:  2013-09-06       Impact factor: 5.285

10.  The ER-Golgi intermediate compartment is a key membrane source for the LC3 lipidation step of autophagosome biogenesis.

Authors:  Liang Ge; David Melville; Min Zhang; Randy Schekman
Journal:  Elife       Date:  2013-08-06       Impact factor: 8.140

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  8 in total

1.  Phosphatidylinositol 4,5-bisphosphate controls Rab7 and PLEKHM1 membrane cycling during autophagosome-lysosome fusion.

Authors:  Takashi Baba; Daniel J Toth; Nivedita Sengupta; Yeun Ju Kim; Tamas Balla
Journal:  EMBO J       Date:  2019-03-13       Impact factor: 11.598

Review 2.  Mechanisms governing autophagosome biogenesis.

Authors:  Hitoshi Nakatogawa
Journal:  Nat Rev Mol Cell Biol       Date:  2020-05-05       Impact factor: 94.444

3.  Vps13 is required for the packaging of the ER into autophagosomes during ER-phagy.

Authors:  Shuliang Chen; Muriel Mari; Smriti Parashar; Dongmei Liu; Yixian Cui; Fulvio Reggiori; Peter J Novick; Susan Ferro-Novick
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-20       Impact factor: 11.205

Review 4.  Autophagy-Regulating microRNAs and Cancer.

Authors:  Devrim Gozuacik; Yunus Akkoc; Deniz Gulfem Ozturk; Muhammed Kocak
Journal:  Front Oncol       Date:  2017-04-18       Impact factor: 6.244

5.  Exosomes from MiR-21-5p-Increased Neurons Play a Role in Neuroprotection by Suppressing Rab11a-Mediated Neuronal Autophagy In Vitro After Traumatic Brain Injury.

Authors:  Dai Li; Shan Huang; Jialin Zhu; Tianpeng Hu; Zhaoli Han; Shishuang Zhang; Jing Zhao; Fanglian Chen; Ping Lei
Journal:  Med Sci Monit       Date:  2019-03-12

Review 6.  Subversion of RAB5-regulated autophagy by the intracellular pathogen Ehrlichia chaffeensis.

Authors:  Yasuko Rikihisa
Journal:  Small GTPases       Date:  2017-07-05

7.  Leucine-rich repeat kinase-2 deficiency protected against cardiac remodelling in mice via regulating autophagy formation and degradation.

Authors:  Yuan Liu; Congqing Hao; Wei Zhang; Yuzhou Liu; Sen Guo; Ran Li; Meng Peng; Yawei Xu; Xiaoxin Pei; Haibo Yang; Yintao Zhao
Journal:  J Adv Res       Date:  2021-07-10       Impact factor: 12.822

8.  A genetic screen in combination with biochemical analysis in Saccharomyces cerevisiae indicates that phenazine-1-carboxylic acid is harmful to vesicular trafficking and autophagy.

Authors:  Xiaolong Zhu; Yan Zeng; Xiu Zhao; Shenshen Zou; Ya-Wen He; Yongheng Liang
Journal:  Sci Rep       Date:  2017-05-16       Impact factor: 4.379

  8 in total

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