Literature DB >> 27667665

RNA Sequencing of Single Human Islet Cells Reveals Type 2 Diabetes Genes.

Yurong Xin1, Jinrang Kim1, Haruka Okamoto1, Min Ni1, Yi Wei1, Christina Adler1, Andrew J Murphy1, George D Yancopoulos1, Calvin Lin1, Jesper Gromada2.   

Abstract

Pancreatic islet cells are critical for maintaining normal blood glucose levels, and their malfunction underlies diabetes development and progression. We used single-cell RNA sequencing to determine the transcriptomes of 1,492 human pancreatic α, β, δ, and PP cells from non-diabetic and type 2 diabetes organ donors. We identified cell-type-specific genes and pathways as well as 245 genes with disturbed expression in type 2 diabetes. Importantly, 92% of the genes have not previously been associated with islet cell function or growth. Comparison of gene profiles in mouse and human α and β cells revealed species-specific expression. All data are available for online browsing and download and will hopefully serve as a resource for the islet research community.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  glucagon; insulin; pancreatic islet cell; pancreatic polypeptide; single-cell RNA sequencing; somatostatin; type 2 diabetes

Mesh:

Year:  2016        PMID: 27667665     DOI: 10.1016/j.cmet.2016.08.018

Source DB:  PubMed          Journal:  Cell Metab        ISSN: 1550-4131            Impact factor:   27.287


  190 in total

1.  Discordance between GLP-1R gene and protein expression in mouse pancreatic islet cells.

Authors:  Sarah M Gray; Yurong Xin; Elizabeth C Ross; Bryanna M Chazotte; Megan E Capozzi; Kimberley El; Berit Svendsen; Peter Ravn; Kyle W Sloop; Jenny Tong; Jesper Gromada; Jonathan E Campbell; David A D'Alessio
Journal:  J Biol Chem       Date:  2020-06-18       Impact factor: 5.157

2.  Gestational Diabetes Adversely Affects Pancreatic Islet Architecture and Function in the Male Rat Offspring.

Authors:  Prasoon Agarwal; Navdeep Brar; Taylor S Morriseau; Stephanie M Kereliuk; Mario A Fonseca; Laura K Cole; Aruni Jha; Bo Xiang; Kristin L Hunt; Nivedita Seshadri; Grant M Hatch; Christine A Doucette; Vernon W Dolinsky
Journal:  Endocrinology       Date:  2019-08-01       Impact factor: 4.736

3.  Single-cell transcriptomics from human pancreatic islets: sample preparation matters.

Authors:  Lori L Bonnycastle; Derek E Gildea; Tingfen Yan; Narisu Narisu; Amy J Swift; Tyra G Wolfsberg; Michael R Erdos; Francis S Collins
Journal:  Biol Methods Protoc       Date:  2020-01-16

4.  scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets.

Authors:  Yingxin Lin; Shila Ghazanfar; Kevin Y X Wang; Johann A Gagnon-Bartsch; Kitty K Lo; Xianbin Su; Ze-Guang Han; John T Ormerod; Terence P Speed; Pengyi Yang; Jean Yee Hwa Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-26       Impact factor: 11.205

5.  Diabetes: Transcriptomes reveal specific islet cell signatures.

Authors:  Tim Geach
Journal:  Nat Rev Endocrinol       Date:  2016-10-14       Impact factor: 43.330

6.  SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references.

Authors:  Meichen Dong; Aatish Thennavan; Eugene Urrutia; Yun Li; Charles M Perou; Fei Zou; Yuchao Jiang
Journal:  Brief Bioinform       Date:  2021-01-18       Impact factor: 11.622

7.  Multiplexed In Situ Imaging Mass Cytometry Analysis of the Human Endocrine Pancreas and Immune System in Type 1 Diabetes.

Authors:  Yue J Wang; Daniel Traum; Jonathan Schug; Long Gao; Chengyang Liu; Mark A Atkinson; Alvin C Powers; Michael D Feldman; Ali Naji; Kyong-Mi Chang; Klaus H Kaestner
Journal:  Cell Metab       Date:  2019-01-31       Impact factor: 27.287

Review 8.  Is a β cell a β cell?

Authors:  Chaoxing Yang; Feorillo Galivo; Craig Dorrell
Journal:  Curr Opin Endocrinol Diabetes Obes       Date:  2017-04       Impact factor: 3.243

Review 9.  NIH Initiative to Improve Understanding of the Pancreas, Islet, and Autoimmunity in Type 1 Diabetes: The Human Pancreas Analysis Program (HPAP).

Authors:  Klaus H Kaestner; Alvin C Powers; Ali Naji; Mark A Atkinson
Journal:  Diabetes       Date:  2019-05-24       Impact factor: 9.461

10.  SingleCellNet: A Computational Tool to Classify Single Cell RNA-Seq Data Across Platforms and Across Species.

Authors:  Yuqi Tan; Patrick Cahan
Journal:  Cell Syst       Date:  2019-07-31       Impact factor: 10.304

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