Literature DB >> 27665591

Prediction of Secondary Structures Conserved in Multiple RNA Sequences.

Zhenjiang Zech Xu1,2, David H Mathews3,4,5.   

Abstract

RNA structure is conserved by evolution to a greater extent than sequence. Predicting the conserved structure for multiple homologous sequences can be much more accurate than predicting the structure for a single sequence. RNAstructure is a software package that includes the programs Dynalign, Multilign, TurboFold, and PARTS for predicting conserved RNA secondary structure. This chapter provides protocols for using these programs.

Keywords:  Comparative sequence analysis; RNA homology; RNA structure prediction

Mesh：

Substances：

Year:  2016        PMID： 27665591     DOI： 10.1007/978-1-4939-6433-8_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  4 in total

1.  Robust T cell activation requires an eIF3-driven burst in T cell receptor translation.

Authors:  Dasmanthie De Silva; Lucas Ferguson; Grant H Chin; Benjamin E Smith; Ryan A Apathy; Theodore L Roth; Franziska Blaeschke; Marek Kudla; Alexander Marson; Nicholas T Ingolia; Jamie Hd Cate
Journal:  Elife       Date:  2021-12-31       Impact factor: 8.140

Review 2.  Know Your Enemy: Successful Bioinformatic Approaches to Predict Functional RNA Structures in Viral RNAs.

Authors:  Chun Shen Lim; Chris M Brown
Journal:  Front Microbiol       Date:  2018-01-04       Impact factor: 5.640

Review 3.  On the Way to Understanding the Interplay between the RNA Structure and Functions in Cells: A Genome-Wide Perspective.

Authors:  Angelika Andrzejewska; Małgorzata Zawadzka; Katarzyna Pachulska-Wieczorek
Journal:  Int J Mol Sci       Date:  2020-09-15       Impact factor: 5.923

4.  RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment.

Authors:  Amir H Bayegan; Peter Clote
Journal:  PLoS One       Date:  2020-01-24       Impact factor: 3.240
  4 in total

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