Literature DB >> 27665590

Secondary Structure Prediction of Single Sequences Using RNAstructure.

Zhenjiang Zech Xu1,2, David H Mathews3.   

Abstract

RNA secondary structure is often predicted using folding thermodynamics. RNAstructure is a software package that includes structure prediction by free energy minimization, prediction of base pairing probabilities, prediction of structures composed of highly probably base pairs, and prediction of structures with pseudoknots. A user-friendly graphical user interface is provided, and this interface works on Windows, Apple OS X, and Linux. This chapter provides protocols for using RNAstructure for structure prediction.

Entities:  

Keywords:  RNA folding thermodynamics; RNA statistical mechanics; RNA structure prediction

Mesh：

Substances：

Year:  2016        PMID： 27665590     DOI： 10.1007/978-1-4939-6433-8_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  11 in total

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