Literature DB >> 27664738

Comparative genome analysis of the oleaginous yeast Trichosporon fermentans reveals its potential applications in lipid accumulation.

Qi Shen1, Yue Chen2, Danfeng Jin3, Hui Lin4, Qun Wang1, Yu-Hua Zhao5.   

Abstract

In this work, Trichosporon fermentans CICC 1368, which has been shown to accumulate cellular lipids efficiently using industry-agricultural wastes, was subjected to preliminary genome analysis, yielding a genome size of 31.3 million bases and 12,702 predicted protein-coding genes. Our analysis also showed a high degree of gene duplications and unique genes compared with those observed in other oleaginous yeasts, with 3-4-fold more genes related to fatty acid elongation and degradation compared with those in Rhodosporidium toruloides NP11 and Yarrowia lipolytica CLIB122. Phylogenetic analysis with other oleaginous microbes suggested that the lipogenic capacity of T. fermentans was obtained during evolution after the divergence of genera. Thus, our study provided the first draft genome and comparative analysis of T. fermentans, laying the foundation for its genetic improvement to facilitate cost-effective lipid production.
Copyright © 2016 Elsevier GmbH. All rights reserved.

Entities:  

Keywords:  Comparative analysis; Evolution; Microbial genome; Microbial oil; Trichosporon fermentans

Mesh:

Substances:

Year:  2016        PMID: 27664738     DOI: 10.1016/j.micres.2016.07.005

Source DB:  PubMed          Journal:  Microbiol Res        ISSN: 0944-5013            Impact factor:   5.415


  4 in total

1.  Draft Genome Sequence of the Oleaginous Yeast Apiotrichum porosum (syn. Trichosporon porosum) DSM 27194.

Authors:  Olga Gorte; Habibu Aliyu; Anke Neumann; Katrin Ochsenreither
Journal:  J Genomics       Date:  2019-01-29

2.  Shared evolutionary footprints suggest mitochondrial oxidative damage underlies multiple complex I losses in fungi.

Authors:  Miquel Àngel Schikora-Tamarit; Marina Marcet-Houben; Jozef Nosek; Toni Gabaldón
Journal:  Open Biol       Date:  2021-04-28       Impact factor: 6.411

3.  Genome Sequence Analysis of the Oleaginous Yeast, Rhodotorula diobovata, and Comparison of the Carotenogenic and Oleaginous Pathway Genes and Gene Products with Other Oleaginous Yeasts.

Authors:  Irene Fakankun; Brian Fristensky; David B Levin
Journal:  J Fungi (Basel)       Date:  2021-04-20

4.  IMA Genome - F16 : Draft genome assemblies of Fusarium marasasianum, Huntiella abstrusa, two Immersiporthe knoxdaviesiana isolates, Macrophomina pseudophaseolina, Macrophomina phaseolina, Naganishia randhawae, and Pseudocercospora cruenta.

Authors:  Brenda D Wingfield; Lieschen De Vos; Andi M Wilson; Tuan A Duong; Niloofar Vaghefi; Angela Botes; Ravindra Nath Kharwar; Ramesh Chand; Barsha Poudel; Habibu Aliyu; Martin J Barbetti; ShuaiFei Chen; Pieter de Maayer; FeiFei Liu; Sudhir Navathe; Shagun Sinha; Emma T Steenkamp; Hiroyuki Suzuki; Kalonji A Tshisekedi; Magriet A van der Nest; Michael J Wingfield
Journal:  IMA Fungus       Date:  2022-02-23       Impact factor: 3.515

  4 in total

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