Literature DB >> 27662375

Single-molecule fluorescence microscopy of native macromolecular complexes.

Vasudha Aggarwal1, Taekjip Ha2.   

Abstract

Macromolecular complexes consisting of proteins, lipids, and/or nucleic acids are ubiquitous in biological processes. Their composition, stoichiometry, order of assembly, and conformations can be heterogeneous or can change dynamically, making single-molecule studies best suited to measure these properties accurately. Recent single-molecule pull-down and other related approaches have combined the principles of conventional co-immunoprecipitation assay with single-molecule fluorescence microscopy to probe native macromolecular complexes. In this review, we present the advances in single-molecule pull-down methods and biological systems that have been investigated in such semi vivo manner.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27662375     DOI: 10.1016/j.sbi.2016.09.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  13 in total

1.  Toward Single-Cell Single-Molecule Pull-Down.

Authors:  Xuefeng Wang; Seongjin Park; Lanying Zeng; Ankur Jain; Taekjip Ha
Journal:  Biophys J       Date:  2018-05-25       Impact factor: 4.033

2.  Oligomerization of the tetramerization domain of p53 probed by two- and three-color single-molecule FRET.

Authors:  Hoi Sung Chung; Fanjie Meng; Jae-Yeol Kim; Kevin McHale; Irina V Gopich; John M Louis
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

3.  Editorial Overview: Single-Molecule Approaches up to Difficult Challenges in Folding and Dynamics.

Authors:  Yongli Zhang; Taekjip Ha; Susan Marqusee
Journal:  J Mol Biol       Date:  2017-12-27       Impact factor: 5.469

4.  Pseudoknot Formation Seeds the Twister Ribozyme Cleavage Reaction Coordinate.

Authors:  Nikola Vušurović; Roger B Altman; Daniel S Terry; Ronald Micura; Scott C Blanchard
Journal:  J Am Chem Soc       Date:  2017-06-09       Impact factor: 15.419

5.  AutoStepfinder: A fast and automated step detection method for single-molecule analysis.

Authors:  Luuk Loeff; Jacob W J Kerssemakers; Chirlmin Joo; Cees Dekker
Journal:  Patterns (N Y)       Date:  2021-04-30

Review 6.  The emerging landscape of single-molecule protein sequencing technologies.

Authors:  Javier Antonio Alfaro; Peggy Bohländer; Mingjie Dai; Mike Filius; Cecil J Howard; Xander F van Kooten; Shilo Ohayon; Adam Pomorski; Sonja Schmid; Amit Meller; Chirlmin Joo; Aleksei Aksimentiev; Eric V Anslyn; Georges Bedran; Chan Cao; Mauro Chinappi; Etienne Coyaud; Cees Dekker; Gunnar Dittmar; Nicholas Drachman; Rienk Eelkema; David Goodlett; Sébastien Hentz; Umesh Kalathiya; Neil L Kelleher; Ryan T Kelly; Zvi Kelman; Sung Hyun Kim; Bernhard Kuster; David Rodriguez-Larrea; Stuart Lindsay; Giovanni Maglia; Edward M Marcotte; John P Marino; Christophe Masselon; Michael Mayer; Patroklos Samaras; Kumar Sarthak; Lusia Sepiashvili; Derek Stein; Meni Wanunu; Mathias Wilhelm; Peng Yin
Journal:  Nat Methods       Date:  2021-06-07       Impact factor: 47.990

7.  Facile single-molecule pull-down assay for analysis of endogenous proteins.

Authors:  Benjamin Croop; Kyu Young Han
Journal:  Phys Biol       Date:  2019-03-22       Impact factor: 2.959

8.  Single-molecule force spectroscopy of protein-membrane interactions.

Authors:  Lu Ma; Yiying Cai; Yanghui Li; Junyi Jiao; Zhenyong Wu; Ben O'Shaughnessy; Pietro De Camilli; Erdem Karatekin; Yongli Zhang
Journal:  Elife       Date:  2017-10-30       Impact factor: 8.140

9.  Quantifying Protein-Protein Interactions by Molecular Counting with Mass Photometry.

Authors:  Fabian Soltermann; Eric D B Foley; Veronica Pagnoni; Martin Galpin; Justin L P Benesch; Philipp Kukura; Weston B Struwe
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-02       Impact factor: 15.336

10.  An engineered opsin monomer scrambles phospholipids.

Authors:  Kalpana Pandey; Birgit Ploier; Michael A Goren; Joshua Levitz; George Khelashvili; Anant K Menon
Journal:  Sci Rep       Date:  2017-12-01       Impact factor: 4.379

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