Literature DB >> 27649880

Roles of eukaryotic topoisomerases in transcription, replication and genomic stability.

Yves Pommier1, Yilun Sun2, Shar-Yin N Huang1, John L Nitiss2.   

Abstract

Topoisomerases introduce transient DNA breaks to relax supercoiled DNA, remove catenanes and enable chromosome segregation. Human cells encode six topoisomerases (TOP1, TOP1mt, TOP2α, TOP2β, TOP3α and TOP3β), which act on a broad range of DNA and RNA substrates at the nuclear and mitochondrial genomes. Their catalytic intermediates, the topoisomerase cleavage complexes (TOPcc), are therapeutic targets of various anticancer drugs. TOPcc can also form on damaged DNA during replication and transcription, and engage specific repair pathways, such as those mediated by tyrosyl-DNA phosphodiesterase 1 (TDP1) and TDP2 and by endonucleases (MRE11, XPF-ERCC1 and MUS81). Here, we review the roles of topoisomerases in mediating chromatin dynamics, transcription, replication, DNA damage repair and genomic stability, and discuss how deregulation of topoisomerases can cause neurodegenerative diseases, immune disorders and cancer.

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Year:  2016        PMID: 27649880      PMCID: PMC9248348          DOI: 10.1038/nrm.2016.111

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   113.915


  243 in total

1.  Benzo[a]pyrene diol epoxide adducts in DNA are potent suppressors of a normal topoisomerase I cleavage site and powerful inducers of other topoisomerase I cleavages.

Authors:  Y Pommier; G Kohlhagen; P Pourquier; J M Sayer; H Kroth; D M Jerina
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

2.  Bidirectional DNA unwinding by a ternary complex of T antigen, nucleolin and topoisomerase I.

Authors:  Stephanie Seinsoth; Heike Uhlmann-Schiffler; Hans Stahl
Journal:  EMBO Rep       Date:  2003-03       Impact factor: 8.807

Review 3.  Repair and genetic consequences of endogenous DNA base damage in mammalian cells.

Authors:  Deborah E Barnes; Tomas Lindahl
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

4.  Reconstitution of mitotic chromatids with a minimum set of purified factors.

Authors:  Keishi Shintomi; Tatsuro S Takahashi; Tatsuya Hirano
Journal:  Nat Cell Biol       Date:  2015-06-15       Impact factor: 28.824

5.  Phytochemicals as Anticancer and Chemopreventive Topoisomerase II Poisons.

Authors:  Adam C Ketron; Neil Osheroff
Journal:  Phytochem Rev       Date:  2014-03-01       Impact factor: 5.374

6.  Topoisomerase 1 inhibition reversibly impairs synaptic function.

Authors:  Angela M Mabb; Paul H M Kullmann; Margaret A Twomey; Jayalakshmi Miriyala; Benjamin D Philpot; Mark J Zylka
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-17       Impact factor: 11.205

7.  Model for MLL translocations in therapy-related leukemia involving topoisomerase IIβ-mediated DNA strand breaks and gene proximity.

Authors:  Ian G Cowell; Zbyslaw Sondka; Kayleigh Smith; Ka Cheong Lee; Catriona M Manville; Malgorzata Sidorczuk-Lesthuruge; Holly Ashlene Rance; Kay Padget; Graham Hunter Jackson; Noritaka Adachi; Caroline A Austin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

Review 8.  Interfacial inhibitors: targeting macromolecular complexes.

Authors:  Yves Pommier; Christophe Marchand
Journal:  Nat Rev Drug Discov       Date:  2011-12-16       Impact factor: 84.694

9.  Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy.

Authors:  Cigall Kadoch; Diana C Hargreaves; Courtney Hodges; Laura Elias; Lena Ho; Jeff Ranish; Gerald R Crabtree
Journal:  Nat Genet       Date:  2013-05-05       Impact factor: 38.330

10.  Chromosome length and perinuclear attachment constrain resolution of DNA intertwines.

Authors:  Iris Titos; Tsvetomira Ivanova; Manuel Mendoza
Journal:  J Cell Biol       Date:  2014-09-15       Impact factor: 10.539

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  296 in total

Review 1.  DNA-protein crosslinks from environmental exposure: Mechanisms of formation and repair.

Authors:  Yusuke Kojima; Yuichi J Machida
Journal:  Environ Mol Mutagen       Date:  2020-07-09       Impact factor: 3.216

2.  Single-molecule Förster resonance energy transfer (FRET) analysis discloses the dynamics of the DNA-topoisomerase II (Top2) interaction in the presence of TOP2-targeting agents.

Authors:  Wan-Chen Huang; Chun-Ying Lee; Tao-Shih Hsieh
Journal:  J Biol Chem       Date:  2017-06-19       Impact factor: 5.157

3.  Tel1/ATM prevents degradation of replication forks that reverse after topoisomerase poisoning.

Authors:  Luca Menin; Sebastian Ursich; Camilla Trovesi; Ralph Zellweger; Massimo Lopes; Maria Pia Longhese; Michela Clerici
Journal:  EMBO Rep       Date:  2018-05-08       Impact factor: 8.807

Review 4.  Targeting Topoisomerase I in the Era of Precision Medicine.

Authors:  Anish Thomas; Yves Pommier
Journal:  Clin Cancer Res       Date:  2019-06-21       Impact factor: 12.531

5.  Synthesis and biological evaluation of 5-aminoethyl benzophenanthridone derivatives as DNA topoisomerase IB inhibitors.

Authors:  Wen-Lin Tang; Yu Zhang; De-Xuan Hu; Hui Yang; Qian Yu; Jian-Wen Chen; Keli Agama; Yves Pommier; Lin-Kun An
Journal:  Eur J Med Chem       Date:  2019-05-30       Impact factor: 6.514

6.  Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening.

Authors:  George T Lountos; Xue Zhi Zhao; Evgeny Kiselev; Joseph E Tropea; Danielle Needle; Yves Pommier; Terrence R Burke; David S Waugh
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

Review 7.  Beyond the unwinding: role of TOP1MT in mitochondrial translation.

Authors:  Simone A Baechler; Ilaria Dalla Rosa; Antonella Spinazzola; Yves Pommier
Journal:  Cell Cycle       Date:  2019-08-09       Impact factor: 4.534

8.  Apurinic endonuclease-1 preserves neural genome integrity to maintain homeostasis and thermoregulation and prevent brain tumors.

Authors:  Lavinia C Dumitrache; Mikio Shimada; Susanna M Downing; Young Don Kwak; Yang Li; Jennifer L Illuzzi; Helen R Russell; David M Wilson; Peter J McKinnon
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-11       Impact factor: 11.205

Review 9.  The impact of replication stress on replication dynamics and DNA damage in vertebrate cells.

Authors:  Hervé Técher; Stéphane Koundrioukoff; Alain Nicolas; Michelle Debatisse
Journal:  Nat Rev Genet       Date:  2017-07-17       Impact factor: 53.242

10.  Constitutively active Artemis nuclease recognizes structures containing single-stranded DNA configurations.

Authors:  Nicholas R Pannunzio; Michael R Lieber
Journal:  DNA Repair (Amst)       Date:  2019-07-26
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