Literature DB >> 27647899

Mechanical approach to chemical transport.

Nikolai Kocherginsky1, Martin Gruebele2.   

Abstract

Nonequilibrium thermodynamics describes the rates of transport phenomena with the aid of various thermodynamic forces, but often the phenomenological transport coefficients are not known, and the description is not easily connected with equilibrium relations. We present a simple and intuitive model to address these issues. Our model is based on Lagrangian dynamics for chemical systems with dissipation, so one may think of the model as physicochemical mechanics. Using one main equation, the model allows a systematic derivation of all transport and equilibrium equations, subject to the limitation that heat generated or absorbed in the system must be small for the model to be valid. A table with all major examples of transport and equilibrium processes described using physicochemical mechanics is given. In equilibrium, physicochemical mechanics reduces to standard thermodynamics and the Gibbs-Duhem relation, and we show that the First and Second Laws of thermodynamics are satisfied for our system plus bath model. Out of equilibrium, our model provides relationships between transport coefficients and describes system evolution in the presence of several simultaneous external fields. The model also leads to an extension of the Onsager-Casimir reciprocal relations for properties simultaneously transported by many components.

Keywords:  Lagrangian; diffusive transport; mass flow; reaction–diffusion model; spatial patterning

Year:  2016        PMID: 27647899      PMCID: PMC5056083          DOI: 10.1073/pnas.1600866113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

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Authors: 
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7.  A thermodynamic derivation of the reciprocal relations.

Authors:  N Kocherginsky; M Gruebele
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8.  Classical mechanics of nonconservative systems.

Authors:  Chad R Galley
Journal:  Phys Rev Lett       Date:  2013-04-22       Impact factor: 9.161

9.  Nonlinear coupled equations for electrochemical cells as developed by the general equation for nonequilibrium reversible-irreversible coupling.

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Journal:  J Chem Phys       Date:  2014-09-28       Impact factor: 3.488

10.  Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.

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Journal:  J Comput Chem       Date:  2012-09-25       Impact factor: 3.376

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