Literature DB >> 27647212

Coding Regions of Intrinsic Disorder Accommodate Parallel Functions.

Rita Pancsa1, Peter Tompa2.   

Abstract

Numerous DNA- and RNA-level functions are embedded in protein-coding regions, which constrains their structure, function, and evolution. Accumulating evidence suggests that such additional, overlapping functions occur preferentially in the coding sequences of intrinsically disordered proteins/regions (IDPs/IDRs), especially in those that are newly incorporated and thus have reduced selective pressure. It is the lack of strict structural constraints that makes disordered proteins more tolerant to mutations and thus more permissive to the appearance of overlapping functions within their coding sequences than structured domains. Therefore, IDPs/IDRs are often mosaics of segments fulfilling protein functionalities and intervening regions primarily carrying nucleotide-level functions. The ensuing complexification of gene-regulatory circuits may have contributed to the evolutionary spread of structural disorder in complex eukaryotic organisms.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  exonic regulatory code; intrinsically disordered; intrinsically disordered intervening region; overlapping codes; parallel coding; structural constraint

Mesh:

Substances:

Year:  2016        PMID: 27647212     DOI: 10.1016/j.tibs.2016.08.009

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  12 in total

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Authors:  Gary Thomas; Joseph E Aslan; Laurel Thomas; Pushkar Shinde; Ujwal Shinde; Thomas Simmen
Journal:  J Cell Sci       Date:  2017-05-05       Impact factor: 5.285

Review 3.  Evolution of intrinsic disorder in eukaryotic proteins.

Authors:  Joseph B Ahrens; Janelle Nunez-Castilla; Jessica Siltberg-Liberles
Journal:  Cell Mol Life Sci       Date:  2017-06-08       Impact factor: 9.261

4.  Evolutionary Forces and Codon Bias in Different Flavors of Intrinsic Disorder in the Human Proteome.

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Journal:  J Mol Evol       Date:  2019-12-10       Impact factor: 2.395

Review 5.  Estimating the prevalence of functional exonic splice regulatory information.

Authors:  Rosina Savisaar; Laurence D Hurst
Journal:  Hum Genet       Date:  2017-04-12       Impact factor: 4.132

6.  Both Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution.

Authors:  Rosina Savisaar; Laurence D Hurst
Journal:  Mol Biol Evol       Date:  2017-05-01       Impact factor: 16.240

7.  Why do eukaryotic proteins contain more intrinsically disordered regions?

Authors:  Walter Basile; Marco Salvatore; Claudio Bassot; Arne Elofsson
Journal:  PLoS Comput Biol       Date:  2019-07-22       Impact factor: 4.475

8.  Refining the Ambush Hypothesis: Evidence That GC- and AT-Rich Bacteria Employ Different Frameshift Defence Strategies.

Authors:  Liam Abrahams; Laurence D Hurst
Journal:  Genome Biol Evol       Date:  2018-04-01       Impact factor: 3.416

9.  Deletion of exons 17 and 18 in prestin's STAS domain results in loss of function.

Authors:  Satoe Takahashi; Tetsuji Yamashita; Kazuaki Homma; Yingjie Zhou; Jian Zuo; Jing Zheng; Mary Ann Cheatham
Journal:  Sci Rep       Date:  2019-05-03       Impact factor: 4.379

Review 10.  Order in Disorder as Observed by the "Hydrophobic Cluster Analysis" of Protein Sequences.

Authors:  Tristan Bitard-Feildel; Alexis Lamiable; Jean-Paul Mornon; Isabelle Callebaut
Journal:  Proteomics       Date:  2018-10-30       Impact factor: 3.984

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