Literature DB >> 27644794

Plant nucleolar DNA: Green light shed on the role of Nucleolin in genome organization.

Claire Picart1,2, Frédéric Pontvianne1,2.   

Abstract

The nucleolus forms as a consequence of ribosome biogenesis, but it is also implicated in other cell functions. The identification of nucleolus-associated chromatin domains (NADs) in animal and plant cells revealed the presence of DNA sequences other than rRNA genes in and around the nucleolus. NADs display repressive chromatin signatures and harbour repetitive DNA, but also tRNA genes and RNA polymerase II-transcribed genes. Furthermore, the identification of NADs revealed a specific function of the nucleolus and the protein Nucleolin 1 (NUC1) in telomere biology. Here, we discuss the significance of these data with regard to nucleolar structure and to the role of the nucleolus and NUC1 in global genome organization and stability.

Entities:  

Keywords:  genome stability; heterochromatin; nuclear architecture; nucleolus; nucleolus-associated chromatin domains

Mesh:

Substances:

Year:  2016        PMID: 27644794      PMCID: PMC5287095          DOI: 10.1080/19491034.2016.1236167

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  28 in total

1.  Ribosomal DNA contributes to global chromatin regulation.

Authors:  Silvana Paredes; Keith A Maggert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-12       Impact factor: 11.205

Review 2.  U3 snoRNA may recycle through different compartments of the nucleolus.

Authors:  S A Gerbi; A Borovjagin
Journal:  Chromosoma       Date:  1997-06       Impact factor: 4.316

3.  Characterization of AtNUC-L1 reveals a central role of nucleolin in nucleolus organization and silencing of AtNUC-L2 gene in Arabidopsis.

Authors:  Frederic Pontvianne; Isabel Matía; Julien Douet; Sylvette Tourmente; Francisco J Medina; Manuel Echeverria; Julio Sáez-Vásquez
Journal:  Mol Biol Cell       Date:  2006-11-15       Impact factor: 4.138

4.  Fluorescence-Activated Nucleolus Sorting in Arabidopsis.

Authors:  Frédéric Pontvianne; Myriam Boyer-Clavel; Julio Sáez-Vásquez
Journal:  Methods Mol Biol       Date:  2016

5.  The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States.

Authors:  Joana Sequeira-Mendes; Irene Aragüez; Ramón Peiró; Raul Mendez-Giraldez; Xiaoyu Zhang; Steven E Jacobsen; Ugo Bastolla; Crisanto Gutierrez
Journal:  Plant Cell       Date:  2014-06-16       Impact factor: 11.277

6.  The nucleoplasmin homolog NLP mediates centromere clustering and anchoring to the nucleolus.

Authors:  Jan Padeken; María José Mendiburo; Sarantis Chlamydas; Hans-Jürgen Schwarz; Elisabeth Kremmer; Patrick Heun
Journal:  Mol Cell       Date:  2013-04-04       Impact factor: 17.970

7.  A duplicated NUCLEOLIN gene with antagonistic activity is required for chromatin organization of silent 45S rDNA in Arabidopsis.

Authors:  Nathalie Durut; Mohamed Abou-Ellail; Frédéric Pontvianne; Sadhan Das; Hisae Kojima; Seiko Ukai; Anne de Bures; Pascale Comella; Sabine Nidelet; Stéphanie Rialle; Remy Merret; Manuel Echeverria; Philippe Bouvet; Kenzo Nakamura; Julio Sáez-Vásquez
Journal:  Plant Cell       Date:  2014-03-25       Impact factor: 11.277

8.  Nucleolus-associated telomere clustering and pairing precede meiotic chromosome synapsis in Arabidopsis thaliana.

Authors:  S J Armstrong; F C Franklin; G H Jones
Journal:  J Cell Sci       Date:  2001-12       Impact factor: 5.285

9.  Spatial organization of large-scale chromatin domains in the nucleus: a magnified view of single chromosome territories.

Authors:  J Ferreira; G Paolella; C Ramos; A I Lamond
Journal:  J Cell Biol       Date:  1997-12-29       Impact factor: 10.539

10.  PrDOS: prediction of disordered protein regions from amino acid sequence.

Authors:  Takashi Ishida; Kengo Kinoshita
Journal:  Nucleic Acids Res       Date:  2007-06-12       Impact factor: 16.971

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  9 in total

Review 1.  Dynamic Changes in Plant Nuclear Organization in Response to Environmental and Developmental Signals.

Authors:  Norman R Groves; Alecia M Biel; Anna H Newman-Griffis; Iris Meier
Journal:  Plant Physiol       Date:  2017-07-24       Impact factor: 8.340

Review 2.  Three-dimensional nuclear organization in Arabidopsis thaliana.

Authors:  Frédéric Pontvianne; Stefan Grob
Journal:  J Plant Res       Date:  2020-04-02       Impact factor: 2.629

3.  Heat Shock Protein HSP101 Affects the Release of Ribosomal Protein mRNAs for Recovery after Heat Shock.

Authors:  Rémy Merret; Marie-Christine Carpentier; Jean-Jacques Favory; Claire Picart; Julie Descombin; Cécile Bousquet-Antonelli; Pascal Tillard; Laurence Lejay; Jean-Marc Deragon; Yee-Yung Charng
Journal:  Plant Physiol       Date:  2017-04-05       Impact factor: 8.340

4.  Ribosomal RNA genes shape chromatin domains associating with the nucleolus.

Authors:  Ariadna Picart-Picolo; Nathalie Picault; Frédéric Pontvianne
Journal:  Nucleus       Date:  2019-03-25       Impact factor: 4.197

5.  Does the chromosomal position of 35S rDNA sites influence their transcription? A survey on Nothoscordum species (Amaryllidaceae).

Authors:  Mariana Báez; Gustavo Souza; Marcelo Guerra
Journal:  Genet Mol Biol       Date:  2020-03-06       Impact factor: 1.771

6.  The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES2.

Authors:  Lilan Luo; Sayuri Ando; Yuki Sakamoto; Takanori Suzuki; Hiro Takahashi; Nanako Ishibashi; Shoko Kojima; Daisuke Kurihara; Tetsuya Higashiyama; Kotaro T Yamamoto; Sachihiro Matsunaga; Chiyoko Machida; Michiko Sasabe; Yasunori Machida
Journal:  Plant J       Date:  2019-11-29       Impact factor: 6.417

7.  Nucleolar Proteome Analysis and Proteasomal Activity Assays Reveal a Link between Nucleolus and 26S Proteasome in A. thaliana.

Authors:  Charlotte Montacié; Nathalie Durut; Alison Opsomer; Denise Palm; Pascale Comella; Claire Picart; Marie-Christine Carpentier; Frederic Pontvianne; Christine Carapito; Enrico Schleiff; Julio Sáez-Vásquez
Journal:  Front Plant Sci       Date:  2017-10-20       Impact factor: 5.753

Review 8.  Roles of ASYMMETRIC LEAVES2 (AS2) and Nucleolar Proteins in the Adaxial-Abaxial Polarity Specification at the Perinucleolar Region in Arabidopsis.

Authors:  Hidekazu Iwakawa; Hiro Takahashi; Yasunori Machida; Chiyoko Machida
Journal:  Int J Mol Sci       Date:  2020-10-03       Impact factor: 5.923

Review 9.  Nucleolus and chromatin.

Authors:  Christian Schöfer; Klara Weipoltshammer
Journal:  Histochem Cell Biol       Date:  2018-07-25       Impact factor: 4.304

  9 in total

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