Literature DB >> 27638401

Investigating somatic aneuploidy in the brain: why we need a new model.

Jimi L Rosenkrantz1, Lucia Carbone2,3,4,5.   

Abstract

The steady occurrence of DNA mutations is a key source for evolution, generating the genomic variation in the population upon which natural selection acts. Mutations driving evolution have to occur in the oocytes and sperm in order to be transmitted to the next generation. Through similar mechanisms, mutations also accumulate in somatic cells (e.g., skin cells, neurons, lymphocytes) during development and adult life. The concept that somatic cells can collect new mutations with time suggests that we are a mosaic of cells with different genomic compositions. Particular attention has been recently paid to somatic mutations in the brain, with a focus on the relationship between this phenomenon and the origin of human diseases. Given this progressive accumulation of mutations, it is likely that an increased load of somatic mutations is present later in life and that this could be associated with late-life diseases and aging. In this review, we focus on a particular type of mutation: the loss and/or gain of whole chromosomes (i.e., aneuploidy) caused by errors in chromosomes segregation in neurons and glia. Currently, it is hard to grasp the functional impact of somatic mutation in the brain because we lack reliable estimates of the proportion of aneuploid cells in the normal brain across different ages. Here, we revisit the key studies that attempted to quantify the proportion of aneuploid cells in both normal and diseased brains and highlight the deep inconsistencies among the different studies done in the last 15 years. Finally, our review highlights several limitations of studies performed in human and rodent models and explores a possible translational role for non-human primates.

Entities:  

Keywords:  Aneuploidy; Glia; Neurons; Primates; Single-cell sequencing

Mesh:

Year:  2016        PMID: 27638401      PMCID: PMC5908214          DOI: 10.1007/s00412-016-0615-4

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  58 in total

1.  A case of human intersexuality having a possible XXY sex-determining mechanism.

Authors:  P A JACOBS; J A STRONG
Journal:  Nature       Date:  1959-01-31       Impact factor: 49.962

2.  Mosaic copy number variation in human neurons.

Authors:  Michael J McConnell; Michael R Lindberg; Kristen J Brennand; Julia C Piper; Thierry Voet; Chris Cowing-Zitron; Svetlana Shumilina; Roger S Lasken; Joris R Vermeesch; Ira M Hall; Fred H Gage
Journal:  Science       Date:  2013-11-01       Impact factor: 47.728

Review 3.  Basic neuroscience research with nonhuman primates: a small but indispensable component of biomedical research.

Authors:  Pieter R Roelfsema; Stefan Treue
Journal:  Neuron       Date:  2014-06-18       Impact factor: 17.173

4.  Tumour evolution inferred by single-cell sequencing.

Authors:  Nicholas Navin; Jude Kendall; Jennifer Troge; Peter Andrews; Linda Rodgers; Jeanne McIndoo; Kerry Cook; Asya Stepansky; Dan Levy; Diane Esposito; Lakshmi Muthuswamy; Alex Krasnitz; W Richard McCombie; James Hicks; Michael Wigler
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

5.  Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.

Authors:  Chenghang Zong; Sijia Lu; Alec R Chapman; X Sunney Xie
Journal:  Science       Date:  2012-12-21       Impact factor: 47.728

Review 6.  Evolution of the neocortex: a perspective from developmental biology.

Authors:  Pasko Rakic
Journal:  Nat Rev Neurosci       Date:  2009-10       Impact factor: 34.870

7.  Aneuploidy in the normal, Alzheimer's disease and ataxia-telangiectasia brain: differential expression and pathological meaning.

Authors:  Ivan Y Iourov; Svetlana G Vorsanova; Thomas Liehr; Yuri B Yurov
Journal:  Neurobiol Dis       Date:  2009-01-21       Impact factor: 5.996

8.  Aneuploidy and confined chromosomal mosaicism in the developing human brain.

Authors:  Yuri B Yurov; Ivan Y Iourov; Svetlana G Vorsanova; Thomas Liehr; Alexei D Kolotii; Sergei I Kutsev; Franck Pellestor; Alfia K Beresheva; Irina A Demidova; Viktor S Kravets; Viktor V Monakhov; Ilia V Soloviev
Journal:  PLoS One       Date:  2007-06-27       Impact factor: 3.240

9.  Single-cell, genome-wide sequencing identifies clonal somatic copy-number variation in the human brain.

Authors:  Xuyu Cai; Gilad D Evrony; Hillel S Lehmann; Princess C Elhosary; Bhaven K Mehta; Annapurna Poduri; Christopher A Walsh
Journal:  Cell Rep       Date:  2014-08-21       Impact factor: 9.423

10.  Chromothripsis from DNA damage in micronuclei.

Authors:  Cheng-Zhong Zhang; Alexander Spektor; Hauke Cornils; Joshua M Francis; Emily K Jackson; Shiwei Liu; Matthew Meyerson; David Pellman
Journal:  Nature       Date:  2015-05-27       Impact factor: 49.962

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  6 in total

Review 1.  Impact of DNA repair and stability defects on cortical development.

Authors:  Federico T Bianchi; Gaia E Berto; Ferdinando Di Cunto
Journal:  Cell Mol Life Sci       Date:  2018-08-16       Impact factor: 9.261

Review 2.  Critical role of mitosis in spontaneous late-onset Alzheimer's disease; from a Shugoshin 1 cohesinopathy mouse model.

Authors:  Chinthalapally V Rao; Mudassir Farooqui; Adam S Asch; Hiroshi Y Yamada
Journal:  Cell Cycle       Date:  2018-09-20       Impact factor: 4.534

3.  Sequencing thousands of single-cell genomes with combinatorial indexing.

Authors:  Sarah A Vitak; Kristof A Torkenczy; Jimi L Rosenkrantz; Andrew J Fields; Lena Christiansen; Melissa H Wong; Lucia Carbone; Frank J Steemers; Andrew Adey
Journal:  Nat Methods       Date:  2017-01-30       Impact factor: 28.547

4.  Induced aneuploidy in neural stem cells triggers a delayed stress response and impairs adult life span in flies.

Authors:  Mihailo Mirkovic; Leonardo G Guilgur; Alexandra Tavares; Diogo Passagem-Santos; Raquel A Oliveira
Journal:  PLoS Biol       Date:  2019-02-22       Impact factor: 8.029

5.  Robust elimination of genome-damaged cells safeguards against brain somatic aneuploidy following Knl1 deletion.

Authors:  Lei Shi; Adel Qalieh; Mandy M Lam; Jason M Keil; Kenneth Y Kwan
Journal:  Nat Commun       Date:  2019-06-13       Impact factor: 17.694

Review 6.  The role of de novo mutations in adult-onset neurodegenerative disorders.

Authors:  Gaël Nicolas; Joris A Veltman
Journal:  Acta Neuropathol       Date:  2018-11-26       Impact factor: 17.088

  6 in total

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