Literature DB >> 27631029

Next Generation Cancer Data Discovery, Access, and Integration Using Prizms and Nanopublications.

James P McCusker1, Timothy Lebo2, Michael Krauthammer3, Deborah L McGuinness4.   

Abstract

To encourage data sharing in the life sciences, supporting tools need to minimize effort and maximize incentives. We have created infrastructure that makes it easy to create portals that supports dataset sharing and simplified publishing of the datasets as high quality linked data. We report here on our infrastructure and its use in the creation of a melanoma dataset portal. This portal is based on the Comprehensive Knowledge Archive Network (CKAN) and Prizms, an infrastructure to acquire, integrate, and publish data using Linked Data principles. In addition, we introduce an extension to CKAN that makes it easy for others to cite datasets from within both publications and subsequently-derived datasets using the emerging nanopublication and World Wide Web Consortium provenance standards.

Entities:  

Year:  2013        PMID: 27631029      PMCID: PMC5019567          DOI: 10.1007/978-3-642-39437-9_9

Source DB:  PubMed          Journal:  Data Integr Life Sci


  2 in total

1.  Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.

Authors:  Michael Krauthammer; Yong Kong; Byung Hak Ha; Perry Evans; Antonella Bacchiocchi; James P McCusker; Elaine Cheng; Matthew J Davis; Gerald Goh; Murim Choi; Stephan Ariyan; Deepak Narayan; Ken Dutton-Regester; Ana Capatana; Edna C Holman; Marcus Bosenberg; Mario Sznol; Harriet M Kluger; Douglas E Brash; David F Stern; Miguel A Materin; Roger S Lo; Shrikant Mane; Shuangge Ma; Kenneth K Kidd; Nicholas K Hayward; Richard P Lifton; Joseph Schlessinger; Titus J Boggon; Ruth Halaban
Journal:  Nat Genet       Date:  2012-07-29       Impact factor: 38.330

2.  Cancer informatics vision: caBIG.

Authors:  Andrew C von Eschenbach; Kenneth Buetow
Journal:  Cancer Inform       Date:  2007-02-06
  2 in total
  2 in total

1.  Micropublication: incentivizing community curation and placing unpublished data into the public domain.

Authors:  Daniela Raciti; Karen Yook; Todd W Harris; Tim Schedl; Paul W Sternberg
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

Review 2.  What incentives increase data sharing in health and medical research? A systematic review.

Authors:  Anisa Rowhani-Farid; Michelle Allen; Adrian G Barnett
Journal:  Res Integr Peer Rev       Date:  2017-05-05
  2 in total

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