Literature DB >> 27629902

Next-Generation Epidemiology: Using Real-Time Core Genome Multilocus Sequence Typing To Support Infection Control Policy.

John P Dekker1, Karen M Frank2.   

Abstract

Multidrug-resistant bacteria are responsible for substantial morbidity and mortality worldwide. Tracking the nosocomial spread of resistant bacteria is critical to infection control. Mellmann et al. (J. Clin. Microbiol. 54:2874-2881, 2016, http://dx.doi.org/10.1128/JCM.00790-16) have described prospective whole-genome sequencing with core genome multilocus sequencing typing (cgMLST) analysis for real-time surveillance and have addressed the practical aspects of implementing this type of operation in the hospital setting.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID： 27629902      PMCID： PMC5121370          DOI： 10.1128/JCM.01714-16

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  28 in total

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2.  Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms.

Authors:  M C Maiden; J A Bygraves; E Feil; G Morelli; J E Russell; R Urwin; Q Zhang; J Zhou; K Zurth; D A Caugant; I M Feavers; M Achtman; B G Spratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

3.  Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach.

Authors:  Thomas A Kohl; Roland Diel; Dag Harmsen; Jörg Rothgänger; Karen Meywald Walter; Matthias Merker; Thomas Weniger; Stefan Niemann
Journal:  J Clin Microbiol       Date:  2014-04-30       Impact factor: 5.948

4.  Multilocus sequence typing (MLST) and whole-genome MLST of Campylobacter jejuni isolates from human infections in three districts during a seasonal peak in Finland.

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Journal:  J Clin Microbiol       Date:  2014-09-17       Impact factor: 5.948

5.  The origin of the Haitian cholera outbreak strain.

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Authors:  Brian H Raphael; Deborah J Baker; Elizabeth Nazarian; Pascal Lapierre; Dianna Bopp; Natalia A Kozak-Muiznieks; Shatavia S Morrison; Claressa E Lucas; Jeffrey W Mercante; Kimberlee A Musser; Jonas M Winchell
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8.  Whole genome multilocus sequence typing as an epidemiologic tool for Yersinia pestis.

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9.  Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology.

Authors:  Alexander Mellmann; Dag Harmsen; Craig A Cummings; Emily B Zentz; Shana R Leopold; Alain Rico; Karola Prior; Rafael Szczepanowski; Yongmei Ji; Wenlan Zhang; Stephen F McLaughlin; John K Henkhaus; Benjamin Leopold; Martina Bielaszewska; Rita Prager; Pius M Brzoska; Richard L Moore; Simone Guenther; Jonathan M Rothberg; Helge Karch
Journal:  PLoS One       Date:  2011-07-20       Impact factor: 3.240

10.  Whole-Genome Sequencing Analysis of Salmonella enterica Serovar Enteritidis Isolates in Chile Provides Insights into Possible Transmission between Gulls, Poultry, and Humans.

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Review 1.  Genomic epidemiology of multidrug-resistant Gram-negative organisms.

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Review 2.  Drug repurposing screens and synergistic drug-combinations for infectious diseases.

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3.  The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification.

Authors:  M Desroches; G Royer; E Denamur; J-W Decousser; D Roche; M Mercier-Darty; D Vallenet; C Médigue; K Bastard; C Rodriguez; O Clermont
Journal:  mSphere       Date:  2018-01-31       Impact factor: 4.389

4.  MentaLiST - A fast MLST caller for large MLST schemes.

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5.  Molecular Epidemiology of Myroides odoratimimus in Nosocomial Catheter-Related Infection at a General Hospital in China.

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6.  Assessing the genomic relatedness and evolutionary rates of persistent verotoxigenic Escherichia coli serotypes within a closed beef herd in Canada.

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7.  A machine learning-based typing scheme refinement for Listeria monocytogenes core genome multilocus sequence typing with high discriminatory power for common source outbreak tracking.

Authors:  Yen-Yi Liu; Chih-Chieh Chen
Journal:  PLoS One       Date:  2021-11-19       Impact factor: 3.240

8.  Role of Efflux in Antibiotic Resistance of Achromobacter xylosoxidans and Achromobacter insuavis Isolates From Patients With Cystic Fibrosis.

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9.  Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria.

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Journal:  Microb Genom       Date:  2019-01-16

10.  Comparison of core-genome MLST, coreSNP and PFGE methods for Klebsiella pneumoniae cluster analysis.

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  10 in total

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