Literature DB >> 27627201

Rapid Tracing of Resistance Plasmids in a Nosocomial Outbreak Using Optical DNA Mapping.

Vilhelm Müller1, Nahid Karami2, Lena K Nyberg1, Christoffer Pichler3, Paola C Torche Pedreschi3, Saair Quaderi1,3, Joachim Fritzsche4, Tobias Ambjörnsson3, Christina Åhrén2, Fredrik Westerlund1.   

Abstract

Resistance to life-saving antibiotics increases rapidly worldwide, and multiresistant bacteria have become a global threat to human health. Presently, the most serious threat is the increasing spread of Enterobacteriaceae carrying genes coding for extended spectrum β-lactamases (ESBL) and carbapenemases on highly mobile plasmids. We here demonstrate how optical DNA maps of single plasmids can be used as fingerprints to trace plasmids, for example, during resistance outbreaks. We use the assay to demonstrate a potential transmission route of an ESBL-carrying plasmid between bacterial strains/species and between patients, during a polyclonal outbreak at a neonatal ward at Sahlgrenska University Hospital (Gothenburg, Sweden). Our results demonstrate that optical DNA mapping is an easy and rapid method for detecting the spread of plasmids mediating resistance. With the increasing prevalence of multiresistant bacteria, diagnostic tools that can aid in solving ongoing routes of transmission, in particular in hospital settings, will be of paramount importance.

Entities:  

Keywords:  antibiotic resistance; nosocomial outbreak; optical DNA mapping; plasmids

Mesh:

Substances:

Year:  2016        PMID: 27627201     DOI: 10.1021/acsinfecdis.6b00017

Source DB:  PubMed          Journal:  ACS Infect Dis        ISSN: 2373-8227            Impact factor:   5.084


  15 in total

1.  Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping.

Authors:  Vilhelm Müller; Fredrika Rajer; Karolin Frykholm; Lena K Nyberg; Saair Quaderi; Joachim Fritzsche; Erik Kristiansson; Tobias Ambjörnsson; Linus Sandegren; Fredrik Westerlund
Journal:  Sci Rep       Date:  2016-12-01       Impact factor: 4.379

2.  Evaluation of MLVA for epidemiological typing and outbreak detection of ESBL-producing Escherichia coli in Sweden.

Authors:  Lisa Helldal; Nahid Karami; Christina Welinder-Olsson; Edward R B Moore; Christina Åhren
Journal:  BMC Microbiol       Date:  2017-01-06       Impact factor: 3.605

3.  Noise reduction in single time frame optical DNA maps.

Authors:  Paola C Torche; Vilhelm Müller; Fredrik Westerlund; Tobias Ambjörnsson
Journal:  PLoS One       Date:  2017-06-22       Impact factor: 3.240

4.  Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach.

Authors:  Albertas Dvirnas; Christoffer Pichler; Callum L Stewart; Saair Quaderi; Lena K Nyberg; Vilhelm Müller; Santosh Kumar Bikkarolla; Erik Kristiansson; Linus Sandegren; Fredrik Westerlund; Tobias Ambjörnsson
Journal:  PLoS One       Date:  2018-03-09       Impact factor: 3.240

5.  Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak.

Authors:  Santosh K Bikkarolla; Viveka Nordberg; Fredrika Rajer; Vilhelm Müller; Muhammad Humaun Kabir; Sriram Kk; Albertas Dvirnas; Tobias Ambjörnsson; Christian G Giske; Lars Navér; Linus Sandegren; Fredrik Westerlund
Journal:  mBio       Date:  2019-07-09       Impact factor: 7.867

6.  The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis.

Authors:  Anna Johnning; Nahid Karami; Erika Tång Hallbäck; Vilhelm Müller; Lena Nyberg; Mariana Buongermino Pereira; Callum Stewart; Tobias Ambjörnsson; Fredrik Westerlund; Ingegerd Adlerberth; Erik Kristiansson
Journal:  Microb Genom       Date:  2018-11-21

7.  Enzyme-free optical DNA mapping of the human genome using competitive binding.

Authors:  Vilhelm Müller; Albertas Dvirnas; John Andersson; Vandana Singh; Sriram Kk; Pegah Johansson; Yuval Ebenstein; Tobias Ambjörnsson; Fredrik Westerlund
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

8.  Identity of blaCTX-M Carrying Plasmids in Sequential ESBL-E. coli Isolates from Patients with Recurrent Urinary Tract Infections.

Authors:  Nahid Karami; Sriram Kk; Shora Yazdanshenas; Yii-Lih Lin; Daniel Jaén-Luchoro; Elina Ekedahl; Sanjana Parameshwaran; Anna Lindblom; Christina Åhrén; Fredrik Westerlund
Journal:  Microorganisms       Date:  2021-05-25

9.  Molecular Epidemiology of OXA-48 and NDM-1 Producing Enterobacterales Species at a University Hospital in Tehran, Iran, Between 2015 and 2016.

Authors:  Hamid Solgi; Shoeib Nematzadeh; Christian G Giske; Farzad Badmasti; Fredrik Westerlund; Yii-Lih Lin; Gaurav Goyal; Vajihe Sadat Nikbin; Amir Hesam Nemati; Fereshteh Shahcheraghi
Journal:  Front Microbiol       Date:  2020-05-28       Impact factor: 5.640

10.  Cultivation-Free Typing of Bacteria Using Optical DNA Mapping.

Authors:  Vilhelm Müller; My Nyblom; Anna Johnning; Marie Wrande; Albertas Dvirnas; Sriram Kk; Christian G Giske; Tobias Ambjörnsson; Linus Sandegren; Erik Kristiansson; Fredrik Westerlund
Journal:  ACS Infect Dis       Date:  2020-04-28       Impact factor: 5.084

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