Literature DB >> 2762323

Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data.

K H Wolfe1, M Gouy, Y W Yang, P M Sharp, W H Li.   

Abstract

The divergence between monocots and dicots represents a major event in higher plant evolution, yet the date of its occurrence remains unknown because of the scarcity of relevant fossils. We have estimated this date by reconstructing phylogenetic trees from chloroplast DNA sequences, using two independent approaches: the rate of synonymous nucleotide substitution was calibrated from the divergence of maize, wheat, and rice, whereas the rate of nonsynonymous substitution was calibrated from the divergence of angiosperms and bryophytes. Both methods lead to an estimate of the monocot-dicot divergence at 200 million years (Myr) ago (with an uncertainty of about 40 Myr). This estimate is also supported by analyses of the nuclear genes encoding large and small subunit ribosomal RNAs. These results imply that the angiosperm lineage emerged in Jurassic-Triassic time, which considerably predates its appearance in the fossil record (approximately 120 Myr ago). We estimate the divergence between cycads and angiosperms to be approximately 340 Myr, which can be taken as an upper bound for the age of angiosperms.

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Year:  1989        PMID: 2762323      PMCID: PMC297805          DOI: 10.1073/pnas.86.16.6201

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

1.  Organization and expression of algal (Chlamydomonas reinhardtii) mitochondrial DNA.

Authors:  M W Gray; P H Boer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1988-05-31       Impact factor: 6.237

2.  A compilation of large subunit RNA sequences presented in a structural format.

Authors:  R R Gutell; G E Fox
Journal:  Nucleic Acids Res       Date:  1988       Impact factor: 16.971

3.  Molecular phylogeny of the kingdoms Animalia, Plantae, and Fungi.

Authors:  M Gouy; W H Li
Journal:  Mol Biol Evol       Date:  1989-03       Impact factor: 16.240

4.  Identification of functional open reading frames in chloroplast genomes.

Authors:  K H Wolfe; P M Sharp
Journal:  Gene       Date:  1988-06-30       Impact factor: 3.688

5.  Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs.

Authors:  K H Wolfe; W H Li; P M Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  1987-12       Impact factor: 11.205

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Nucleotide sequence and evolution of the 18S ribosomal RNA gene in maize mitochondria.

Authors:  S Chao; R Sederoff; C S Levings
Journal:  Nucleic Acids Res       Date:  1984-08-24       Impact factor: 16.971

8.  The Nature of Nucleotide Sequence Divergence between Barley and Maize Chloroplast DNA.

Authors:  G Zurawski; M T Clegg; A H Brown
Journal:  Genetics       Date:  1984-04       Impact factor: 4.562

Review 9.  A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.

Authors:  W H Li; C I Wu; C C Luo
Journal:  Mol Biol Evol       Date:  1985-03       Impact factor: 16.240

10.  Effect of timing of cefuroxime dosage on its protection of rats against gentamicin nephrotoxicity.

Authors:  K Capel-Edwards; R M Atkinson; J M Wheeldon; D A Pratt; G G Patterson; I W Harman; R D Foord
Journal:  Infection       Date:  1980       Impact factor: 3.553

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  248 in total

1.  Arabidopsis-rice: will colinearity allow gene prediction across the eudicot-monocot divide?

Authors:  K M Devos; J Beales; Y Nagamura; T Sasaki
Journal:  Genome Res       Date:  1999-09       Impact factor: 9.043

Review 2.  Examining rates and patterns of nucleotide substitution in plants.

Authors:  S V Muse
Journal:  Plant Mol Biol       Date:  2000-01       Impact factor: 4.076

Review 3.  Evolution of genes and taxa: a primer.

Authors:  J J Doyle; B S Gaut
Journal:  Plant Mol Biol       Date:  2000-01       Impact factor: 4.076

4.  Structure and expression of duplicate AGAMOUS orthologues in poplar.

Authors:  A M Brunner; W H Rottmann; L A Sheppard; K Krutovskii; S P DiFazio; S Leonardi; S H Strauss
Journal:  Plant Mol Biol       Date:  2000-11       Impact factor: 4.076

5.  DNA sequence evidence for the segmental allotetraploid origin of maize.

Authors:  B S Gaut; J F Doebley
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-24       Impact factor: 11.205

6.  Evolution of the angiosperms: calibrating the family tree.

Authors:  N Wikström; V Savolainen; M W Chase
Journal:  Proc Biol Sci       Date:  2001-11-07       Impact factor: 5.349

7.  Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils.

Authors:  Pamela S Soltis; Douglas E Soltis; Vincent Savolainen; Peter R Crane; Timothy G Barraclough
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-26       Impact factor: 11.205

Review 8.  Through a genome, darkly: comparative analysis of plant chromosomal DNA.

Authors:  Graham J King
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

9.  Numerous small rearrangements of gene content, order and orientation differentiate grass genomes.

Authors:  Jeffrey L Bennetzen; Wusirika Ramakrishna
Journal:  Plant Mol Biol       Date:  2002 Mar-Apr       Impact factor: 4.076

Review 10.  Comparative genomics of plant chromosomes.

Authors:  A H Paterson; J E Bowers; M D Burow; X Draye; C G Elsik; C X Jiang; C S Katsar; T H Lan; Y R Lin; R Ming; R J Wright
Journal:  Plant Cell       Date:  2000-09       Impact factor: 11.277

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