Literature DB >> 27621473

Molecular determinants of cadherin ideal bond formation: Conformation-dependent unbinding on a multidimensional landscape.

Kristine Manibog1, Kannan Sankar2, Sun-Ae Kim1, Yunxiang Zhang3, Robert L Jernigan4, Sanjeevi Sivasankar5.   

Abstract

Classical cadherin cell-cell adhesion proteins are essential for the formation and maintenance of tissue structures; their primary function is to physically couple neighboring cells and withstand mechanical force. Cadherins from opposing cells bind in two distinct trans conformations: strand-swap dimers and X-dimers. As cadherins convert between these conformations, they form ideal bonds (i.e., adhesive interactions that are insensitive to force). However, the biophysical mechanism for ideal bond formation is unknown. Here, we integrate single-molecule force measurements with coarse-grained and atomistic simulations to resolve the mechanistic basis for cadherin ideal bond formation. Using simulations, we predict the energy landscape for cadherin adhesion, the transition pathways for interconversion between X-dimers and strand-swap dimers, and the cadherin structures that form ideal bonds. Based on these predictions, we engineer cadherin mutants that promote or inhibit ideal bond formation and measure their force-dependent kinetics using single-molecule force-clamp measurements with an atomic force microscope. Our data establish that cadherins adopt an intermediate conformation as they shuttle between X-dimers and strand-swap dimers; pulling on this conformation induces a torsional motion perpendicular to the pulling direction that unbinds the proteins and forms force-independent ideal bonds. Torsional motion is blocked when cadherins associate laterally in a cis orientation, suggesting that ideal bonds may play a role in mechanically regulating cadherin clustering on cell surfaces.

Keywords:  AFM; cell adhesion; mechanobiology; simulations; single-molecule biophysics

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Year:  2016        PMID: 27621473      PMCID: PMC5047164          DOI: 10.1073/pnas.1604012113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  54 in total

1.  C-cadherin ectodomain structure and implications for cell adhesion mechanisms.

Authors:  Titus J Boggon; John Murray; Sophie Chappuis-Flament; Ellen Wong; Barry M Gumbiner; Lawrence Shapiro
Journal:  Science       Date:  2002-04-18       Impact factor: 47.728

2.  A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6.

Authors:  Chris Oostenbrink; Alessandra Villa; Alan E Mark; Wilfred F van Gunsteren
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

Review 3.  Biophysics of cadherin adhesion.

Authors:  Deborah Leckband; Sanjeevi Sivasankar
Journal:  Subcell Biochem       Date:  2012

4.  TASSER: an automated method for the prediction of protein tertiary structures in CASP6.

Authors:  Yang Zhang; Adrian K Arakaki; Jeffrey Skolnick
Journal:  Proteins       Date:  2005

5.  Intrinsic rates and activation free energies from single-molecule pulling experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Phys Rev Lett       Date:  2006-03-15       Impact factor: 9.161

6.  Dynamics and stability of E-cadherin dimers.

Authors:  Fabien Cailliez; Richard Lavery
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

7.  The crystal structure of human E-cadherin domains 1 and 2, and comparison with other cadherins in the context of adhesion mechanism.

Authors:  Emilio Parisini; Jonathan M G Higgins; Jin-huan Liu; Michael B Brenner; Jia-huai Wang
Journal:  J Mol Biol       Date:  2007-08-21       Impact factor: 5.469

8.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

Review 9.  Tissue organization by cadherin adhesion molecules: dynamic molecular and cellular mechanisms of morphogenetic regulation.

Authors:  Carien M Niessen; Deborah Leckband; Alpha S Yap
Journal:  Physiol Rev       Date:  2011-04       Impact factor: 37.312

10.  Forced dissociation of the strand dimer interface between C-cadherin ectodomains.

Authors:  M V Bayas; K Schulten; D Leckband
Journal:  Mech Chem Biosyst       Date:  2004-06
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  11 in total

1.  Single-molecule studies of classical and desmosomal cadherin adhesion.

Authors:  Andrew Vae Priest; Ramesh Koirala; Sanjeevi Sivasankar
Journal:  Curr Opin Biomed Eng       Date:  2019-09-28

2.  Elastic versus brittle mechanical responses predicted for dimeric cadherin complexes.

Authors:  Brandon L Neel; Collin R Nisler; Sanket Walujkar; Raul Araya-Secchi; Marcos Sotomayor
Journal:  Biophys J       Date:  2022-02-11       Impact factor: 4.033

3.  Multiple dimeric structures and strand-swap dimerization of E-cadherin in solution visualized by high-speed atomic force microscopy.

Authors:  Shigetaka Nishiguchi; Tadaomi Furuta; Takayuki Uchihashi
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-22       Impact factor: 12.779

4.  Using Surface Hydrophobicity Together with Empirical Potentials to Identify Protein-Protein Binding Sites: Application to the Interactions of E-cadherins.

Authors:  Robert L Jernigan; Pranav Khade; Ambuj Kumar; Andrzej Kloczkowski
Journal:  Methods Mol Biol       Date:  2022

5.  Inside-out regulation of E-cadherin conformation and adhesion.

Authors:  Ramesh Koirala; Andrew Vae Priest; Chi-Fu Yen; Joleen S Cheah; Willem-Jan Pannekoek; Martijn Gloerich; Soichiro Yamada; Sanjeevi Sivasankar
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

6.  Structural basis of the strong cell-cell junction formed by cadherin-23.

Authors:  G S Singaraju; A Sagar; A Kumar; J S Samuel; J P Hazra; M K Sannigrahi; R M Yennamalli; Fnu Ashish; S Rakshit
Journal:  FEBS J       Date:  2019-11-15       Impact factor: 5.542

7.  Direct visualization of the extracellular binding structure of E-cadherins in liquid.

Authors:  Teiko Shibata-Seki; Masato Nagaoka; Mitsuaki Goto; Eiry Kobatake; Toshihiro Akaike
Journal:  Sci Rep       Date:  2020-10-12       Impact factor: 4.379

8.  Epithelial and Neural Cadherin in Mammalian Fertilization: Studies in the Mouse Model.

Authors:  Gustavo Luis Verón; María Florencia Veiga; Mónica Cameo; Clara Isabel Marín-Briggiler; Mónica Hebe Vazquez-Levin
Journal:  Cells       Date:  2021-12-29       Impact factor: 6.600

9.  Molecular mechanism for strengthening E-cadherin adhesion using a monoclonal antibody.

Authors:  Bin Xie; Allison Maker; Andrew V Priest; David M Dranow; Jenny N Phan; Thomas E Edwards; Bart L Staker; Peter J Myler; Barry M Gumbiner; Sanjeevi Sivasankar
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-03       Impact factor: 12.779

10.  E-cadherin binds to desmoglein to facilitate desmosome assembly.

Authors:  Omer Shafraz; Matthias Rübsam; Sara N Stahley; Amber L Caldara; Andrew P Kowalczyk; Carien M Niessen; Sanjeevi Sivasankar
Journal:  Elife       Date:  2018-07-12       Impact factor: 8.140

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