Literature DB >> 27616944

Counter machines and crystallographic structures.

N Jonoska1, M Krajcevski1, G McColm1.   

Abstract

One way to depict a crystallographic structure is by a periodic (di)graph, i.e., a graph whose group of automorphisms has a translational subgroup of finite index acting freely on the structure. We establish a relationship between periodic graphs representing crystallographic structures and an infinite hierarchy of intersection languages 𝒟𝒞ℒ d , d = 0, 1, 2, …, within the intersection classes of deterministic context-free languages. We introduce a class of counter machines that accept these languages, where the machines with d counters recognize the class 𝒟𝒞ℒ d An intersection of d languages in 𝒟𝒞ℒ1 defines 𝒟𝒞ℒ d . We prove that there is a one-to-one correspondence between sets of walks starting and ending in the same unit of a d-dimensional periodic (di)graph and the class of languages in 𝒟𝒞ℒ d . The proof uses the following result: given a digraph Δ and a group G, there is a unique digraph Γ such that G ≤ Aut Γ, G acts freely on the structure, and Γ/G ≅ Δ.

Entities:  

Keywords:  Context-free languages; Counter machines; Crystallographic structures; Periodic digraphs

Year:  2015        PMID: 27616944      PMCID: PMC5012322          DOI: 10.1007/s11047-015-9527-0

Source DB:  PubMed          Journal:  Nat Comput        ISSN: 1567-7818            Impact factor:   1.690


  5 in total

1.  Graph-theoretical characterization of periodicity in crystallographic nets and other infinite graphs.

Authors:  Jean-Guillaume Eon
Journal:  Acta Crystallogr A       Date:  2005-08-19       Impact factor: 2.290

Review 2.  Taxonomy of periodic nets and the design of materials.

Authors:  Olaf Delgado-Friedrichs; Michael O'Keeffe; Omar M Yaghi
Journal:  Phys Chem Chem Phys       Date:  2007-01-02       Impact factor: 3.676

3.  Unexpected stable stoichiometries of sodium chlorides.

Authors:  Weiwei Zhang; Artem R Oganov; Alexander F Goncharov; Qiang Zhu; Salah Eddine Boulfelfel; Andriy O Lyakhov; Elissaios Stavrou; Maddury Somayazulu; Vitali B Prakapenka; Zuzana Konôpková
Journal:  Science       Date:  2013-12-20       Impact factor: 47.728

4.  Metal-organic frameworks as a tunable platform for designing functional molecular materials.

Authors:  Cheng Wang; Demin Liu; Wenbin Lin
Journal:  J Am Chem Soc       Date:  2013-08-28       Impact factor: 15.419

5.  From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal.

Authors:  Jianping Zheng; Jens J Birktoft; Yi Chen; Tong Wang; Ruojie Sha; Pamela E Constantinou; Stephan L Ginell; Chengde Mao; Nadrian C Seeman
Journal:  Nature       Date:  2009-09-03       Impact factor: 49.962

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.