Literature DB >> 27616564

Non-Debye frustrated hydration steers biomolecular association: interfacial tension for the drug designer.

Ariel Fernández1,2.   

Abstract

Many cellular functions involve the assembly of biomolecular complexes, a process mediated by water that gets displaced as subunits bind. This process affects water frustration, that is, the number of unmet hydrogen-bonding opportunities at the protein-water interface. By searching for least-frustrated aqueous interfaces, this study delineates the role of frustration in steering molecular assemblage. The search entails a trajectory sampling using a functional that measures the gradient of frustration and computing the resulting non-Debye electrostatics within relaxation times for coupled protein-water systems. The minimal frustration principle is validated against spectroscopic measurements of frustration-dependent dielectric relaxation, affinity scanning of protein-protein interfaces, and NMR-inferred association propensities of protein-complex intermediates. The methods are applied to drug design, revealing the targetable nature of the aqueous interface.
© 2016 Federation of European Biochemical Societies.

Entities:  

Keywords:  aqueous interface; drug design; molecular modeling; protein associations; structural biology

Mesh:

Substances:

Year:  2016        PMID: 27616564     DOI: 10.1002/1873-3468.12418

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  2 in total

Review 1.  Tendon Extracellular Matrix Assembly, Maintenance and Dysregulation Throughout Life.

Authors:  Seyed Mohammad Siadat; Danae E Zamboulis; Chavaunne T Thorpe; Jeffrey W Ruberti; Brianne K Connizzo
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

2.  Supramolecular Organization of Nonstoichiometric Drug Hydrates: Dapsone.

Authors:  Doris E Braun; Ulrich J Griesser
Journal:  Front Chem       Date:  2018-02-22       Impact factor: 5.221

  2 in total

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