| Literature DB >> 27616564 |
Ariel Fernández1,2.
Abstract
Many cellular functions involve the assembly of biomolecular complexes, a process mediated by water that gets displaced as subunits bind. This process affects water frustration, that is, the number of unmet hydrogen-bonding opportunities at the protein-water interface. By searching for least-frustrated aqueous interfaces, this study delineates the role of frustration in steering molecular assemblage. The search entails a trajectory sampling using a functional that measures the gradient of frustration and computing the resulting non-Debye electrostatics within relaxation times for coupled protein-water systems. The minimal frustration principle is validated against spectroscopic measurements of frustration-dependent dielectric relaxation, affinity scanning of protein-protein interfaces, and NMR-inferred association propensities of protein-complex intermediates. The methods are applied to drug design, revealing the targetable nature of the aqueous interface.Entities:
Keywords: aqueous interface; drug design; molecular modeling; protein associations; structural biology
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Year: 2016 PMID: 27616564 DOI: 10.1002/1873-3468.12418
Source DB: PubMed Journal: FEBS Lett ISSN: 0014-5793 Impact factor: 4.124