Literature DB >> 27611230

Chromatin architecture: A new dimension in the dynamic control of gene expression.

Juan Sebastian Ramirez-Prado1, Natalia Yaneth Rodriguez-Granados2, Federico Ariel3, Cécile Raynaud2, Moussa Benhamed1,2.   

Abstract

As the most recent evidence of eukaryotic cell complexity, genome architecture has astounded the scientific community and prompted a variety of technical and cognitive challenges. Several technologies have emerged and evidenced the integration of chromatin packaging and topology, epigenetic processes, and transcription for the pertinent regulation of gene expression. In the present addendum we present and discuss some of our recent research, directed toward the holistic comprehension of the processes by which plants respond to environmental and developmental stimuli. We propose that the study of genome topology and genomic interactions is essential for the understanding of the molecular mechanisms behind a phenotype. Even though our knowledge and understanding of genome architecture and hierarchy has improved substantially in the last few years -in Arabidopsis and other eukaryotes -, there is still a long way ahead in this relatively new field of study. For this, it is necessary to take advantage of the high resolution of the emerging available techniques, and perform integrative approaches with which it will be possible to depict the role of chromatin architecture in the regulation of transcription and ultimately, physiological processes.

Entities:  

Keywords:  Chromatin architecture; gene expression; gene loops; genome topology; genomic interactions; lncRNAs

Mesh:

Substances:

Year:  2016        PMID: 27611230      PMCID: PMC5117090          DOI: 10.1080/15592324.2016.1232224

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  16 in total

Review 1.  Control of eukaryotic gene expression: gene loops and transcriptional memory.

Authors:  Michael Hampsey; Badri Nath Singh; Athar Ansari; Jean-Philippe Lainé; Shankarling Krishnamurthy
Journal:  Adv Enzyme Regul       Date:  2010-10-29

2.  The transcription factor FLC confers a flowering response to vernalization by repressing meristem competence and systemic signaling in Arabidopsis.

Authors:  Iain Searle; Yuehui He; Franziska Turck; Coral Vincent; Fabio Fornara; Sandra Kröber; Richard A Amasino; George Coupland
Journal:  Genes Dev       Date:  2006-04-01       Impact factor: 11.361

3.  A physiological role for gene loops in yeast.

Authors:  Jean-Philippe Lainé; Badri Nath Singh; Shankarling Krishnamurthy; Michael Hampsey
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

4.  Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop.

Authors:  Federico Ariel; Teddy Jegu; David Latrasse; Natali Romero-Barrios; Aurélie Christ; Moussa Benhamed; Martin Crespi
Journal:  Mol Cell       Date:  2014-07-10       Impact factor: 17.970

5.  Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila.

Authors:  Stefan Grob; Marc W Schmid; Ueli Grossniklaus
Journal:  Mol Cell       Date:  2014-08-14       Impact factor: 17.970

6.  Chromatin in 3D: progress and prospects for plants.

Authors:  Chang Liu; Detlef Weigel
Journal:  Genome Biol       Date:  2015-08-21       Impact factor: 13.583

7.  Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.

Authors:  Congmao Wang; Chang Liu; Damian Roqueiro; Dominik Grimm; Rebecca Schwab; Claude Becker; Christa Lanz; Detlef Weigel
Journal:  Genome Res       Date:  2014-11-03       Impact factor: 9.043

8.  LHP1 Regulates H3K27me3 Spreading and Shapes the Three-Dimensional Conformation of the Arabidopsis Genome.

Authors:  Alaguraj Veluchamy; Teddy Jégu; Federico Ariel; David Latrasse; Kiruthiga Gayathri Mariappan; Soon-Kap Kim; Martin Crespi; Heribert Hirt; Catherine Bergounioux; Cécile Raynaud; Moussa Benhamed
Journal:  PLoS One       Date:  2016-07-13       Impact factor: 3.240

9.  CTCF-mediated chromatin loops enclose inducible gene regulatory domains.

Authors:  Martin Oti; Jonas Falck; Martijn A Huynen; Huiqing Zhou
Journal:  BMC Genomics       Date:  2016-03-22       Impact factor: 3.969

10.  A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture.

Authors:  Teddy Jégu; Séverine Domenichini; Thomas Blein; Federico Ariel; Aurélie Christ; Soon-Kap Kim; Martin Crespi; Stéphanie Boutet-Mercey; Grégory Mouille; Mickaël Bourge; Heribert Hirt; Catherine Bergounioux; Cécile Raynaud; Moussa Benhamed
Journal:  PLoS One       Date:  2015-10-12       Impact factor: 3.240

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  1 in total

1.  The quest for epigenetic regulation underlying unisexual flower development in Cucumis melo.

Authors:  Natalia Y Rodriguez-Granados; Alaguraj Veluchamy; David Latrasse; Kiruthiga Gayathri Mariappan; Claudia Bevilacqua; Nicolas Crapart; Celine Camps; Vivien Sommard; Cécile Raynaud; Catherine Dogimont; Adnane Boualem; Moussa Benhamed; Abdelhafid Bendahmane
Journal:  Epigenetics Chromatin       Date:  2017-06-06       Impact factor: 4.954

  1 in total

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