| Literature DB >> 27610275 |
Craig H Carlson1, Lawrence B Smart1.
Abstract
PREMISE OF THE STUDY: Root biomass is an important trait often disregarded in woody perennial selection due to the challenge and expense of accurately and efficiently measuring large populations. In this study, we aim to develop a simple method that can predict root dry weight within a diverse shrub willow (Salix) breeding population representing species hybrids and their parents using root electrical capacitance (REC).Entities:
Keywords: bioenergy; biomass; breeding; phenotype; selection; short-rotation coppice
Year: 2016 PMID: 27610275 PMCID: PMC5001857 DOI: 10.3732/apps.1600031
Source DB: PubMed Journal: Appl Plant Sci ISSN: 2168-0450 Impact factor: 1.936
Description of family, pedigree, and generation in intraspecific and interspecific crosses of shrub willow (Salix; Salicaceae).
| Family ID | Female parent | Male parent | Pedigree | Fn | Ploidy |
| 082 | 94006 | 94001 | F1 | 2 | |
| 317 | ‘Wolcott’ | ‘Fish Creek’ | F2 | 2 | |
| 407 | 94006 | ‘Jorr’ | F1 | 2 | |
| 421 | 07-MBG-5027 | 94001 | F1 | 2 | |
| 415 | 94006 | 01-200-003 | F1 | 3 | |
| 423 | 07-MBG-5027 | 01-200-003 | F1 | 3 | |
| 430 | 01-200-006 | ‘Jorr’ | F1 | 3 | |
| 425 | 01-200-006 | SX64 | F1 | 4 |
List of biomass-related variables including their descriptions and units.
| Trait abbreviation | Description | Units | Measured (WAP) |
| Aboveground | |||
| SDW | Stem dry weight | g plant−1 | 11 |
| SSL | Sum stem length | cm | 2–11 |
| MSL | Mean stem length | cm | 2–11 |
| MXL | Maximum stem length | cm | 2–11 |
| MSA | Mean stem area | cm2 | 11 |
| SSA | Sum stem area | cm2 | 11 |
| RGR | Relative growth rate | cm d−1 | 3–11 |
| PSN | Primary stem number | # | 11 |
| ASN | Axial stem number | # | 5, 10 |
| LDW | Leaf dry weight | g plant−1 | 11 |
| SPD | SPAD | SPAD units | 2, 4, 10, 11 |
| PHE | Vegetative phenology | 0→5 | 2–3 |
| MSD | Mean stem diameter | cm | 11 |
| SSD | Sum stem diameter | cm | 11 |
| LFA | Leaf area | cm2 | 11 |
| SLA | Specific leaf area | cm2 g−1 | 10 |
| LMA | Leaf mass per area | g cm−2 | 10 |
| Belowground | |||
| REC | Root electrical capacitance | nF | 11 |
| RDW | Root dry weight | g plant−1 | 11 |
| CDIA | Cutting diameter | cm | 11 |
| CDW | Cutting dry weight | g plant−1 | 11 |
| RDIA | Mean root diameter | cm | 11 |
| PRN | Primary root number | # | 11 |
| SRN | Secondary root number | # | 11 |
| TRN | Total root number | # | 11 |
Note: WAP = weeks after planting.
Fig. 1.Root electrical capacitance (REC) family means and errors (±SE) of four replicates as well as their respective Tukey’s honest significant difference (HSD) at a 95% level of confidence. Outlined box plots to the right of bars represent the corresponding midparent value (±SD) for the parents of each family. Midparent means within box plots are denoted by bold horizontal lines. The male parent of family 425 was not present in this trial, thus the midparent box plot of family 425 is not shown. The species pedigree of each family is abbreviated above family identifiers, where pur = Salix purpurea, vim = S. viminalis, and miya = S. miyabeana. The direction of the cross is designated as female parent × male parent species.
Fig. 2.Linear regression and K-fold cross-validation scatter plot of observed root dry weight biomass (RDW) predicted by root electrical capacitance (REC). The linear regression is y = 0.21x – 6.91 (R2 = 0.77). Vertical red lines perpendicular to the regression line (solid black) represent the residual of the model fit, and colored lines represent K-fold sampling.
Pearson correlation coefficients, their confidence intervals, and significance of above- and belowground traits with root electrical capacitance (REC) and root dry weight (RDW). See Table 2 for trait definitions.
| REC | RDW | |||||
| Trait | CI | CI | ||||
| Aboveground | ||||||
| SDW | 0.72 | 0.66–0.75 | <0.001 | 0.52 | 0.29–0.75 | 0.019 |
| LDW | 0.56 | 0.49–0.62 | <0.001 | 0.78 | 0.51–0.91 | <0.001 |
| SSL | 0.53 | 0.45–0.59 | <0.001 | 0.59 | 0.22–0.82 | 0.005 |
| MSL | 0.37 | 0.28–0.45 | <0.001 | 0.69 | 0.35–0.86 | <0.001 |
| MXL | 0.44 | 0.35–0.31 | <0.001 | 0.78 | 0.52–0.91 | <0.001 |
| RGR | 0.42 | 0.33–0.49 | <0.001 | 0.33 | 0.27–0.44 | 0.005 |
| MSA | 0.23 | 0.14–0.32 | <0.001 | 0.31 | — | 0.178 |
| SSA | 0.39 | 0.31–0.46 | <0.001 | 0.20 | — | 0.406 |
| LFA | 0.09 | — | 0.092 | 0.32 | — | 0.159 |
| PSN | 0.22 | 0.13–0.31 | <0.001 | 0.23 | — | 0.310 |
| ASN | 0.19 | 0.10–0.28 | <0.001 | 0.64 | 0.29–0.85 | 0.002 |
| SPD | −0.11 | 0.01–0.20 | <0.001 | −0.34 | — | 0.139 |
| PHE | 0.38 | 0.29–0.46 | <0.001 | 0.58 | 0.18–0.81 | 0.007 |
| MSD | 0.13 | 0.03–0.22 | <0.001 | 0.33 | — | 0.148 |
| SSD | 0.39 | 0.31–0.47 | 0.0091 | 0.19 | — | 0.414 |
| SLA | −0.23 | 0.13–0.31 | <0.001 | −0.56 | 0.15–0.80 | 0.010 |
| LMA | 0.24 | 0.20–0.30 | <0.001 | 0.59 | 0.13–0.79 | 0.007 |
| Belowground | ||||||
| REC | 0.88 | 0.71–0.95 | <0.001 | |||
| RDW | 0.88 | 0.71–0.95 | <0.001 | |||
| CDIA | 0.65 | 0.30–0.85 | 0.001 | 0.67 | 0.33–0.86 | 0.001 |
| CDW | 0.67 | 0.33–0.86 | <0.001 | 0.70 | 0.37–0.84 | <0.001 |
| RDIA | 0.20 | 0.27–0.59 | 0.002 | 0.05 | — | 0.982 |
| PRN | 0.64 | 0.29–0.84 | 0.016 | 0.50 | 0.08–0.77 | 0.023 |
| TRN | 0.59 | 0.20–0.81 | 0.041 | 0.53 | 0.12–0.79 | 0.005 |
| SRN | 0.34 | 0.12–0.67 | 0.006 | 0.45 | 0.03–0.74 | 0.041 |
Fig. 3.Relative importance predictor index metrics for total stem dry weight biomass (SDW). Bar plots of each model index describe the variance explained as a percentage R2 (summed to 100%). For each predictor, confidence intervals (CIs) were produced using 1000 bootstrap replicates at a 95% level of significance. Low percentages of total R2 or CIs approaching zero describe unimportant variable contributions (e.g., SPD, “First” index method).