Literature DB >> 27608989

An automated nudged elastic band method.

Esben L Kolsbjerg1, Michael N Groves1, Bjørk Hammer1.   

Abstract

A robust, efficient, dynamic, and automated nudged elastic band (AutoNEB) algorithm to effectively locate transition states is presented. The strength of the algorithm is its ability to use fewer resources than the nudged elastic band (NEB) method by focusing first on converging a rough path before improving upon the resolution around the transition state. To demonstrate its efficiency, it has been benchmarked using a simple diffusion problem and a dehydrogenation reaction. In both cases, the total number of force evaluations used by the AutoNEB method is significantly less than the NEB method. Furthermore, it is shown that for a fast and robust relaxation to the transition state, a climbing image elastic band method where the full spring force, rather than only the component parallel to the local tangent to the path, is preferred especially for pathways through energy landscapes with multiple local minima. The resulting corner cutting does not affect the accuracy of the transition state as long as this is located with the climbing image method. Finally, a number of pitfalls often encountered while locating the true transition state of a reaction are discussed in terms of systematically exploring the multidimensional energy landscape of a given process.

Year:  2016        PMID: 27608989     DOI: 10.1063/1.4961868

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Monitoring interconversion between stereochemical states in single chirality-transfer complexes on a platinum surface.

Authors:  Guillaume Goubert; Yi Dong; Michael N Groves; J-C Lemay; Bjørk Hammer; Peter H McBreen
Journal:  Nat Chem       Date:  2017-04-03       Impact factor: 24.427

2.  CNT-Assembled Octahedron Carbon-Encapsulated Cu3P/Cu Heterostructure by In Situ MOF-Derived Engineering for Superior Lithium Storage: Investigations by Experimental Implementation and First-Principles Calculation.

Authors:  Jia Lin; Chenghui Zeng; Xiaoming Lin; Chao Xu; Cheng-Yong Su
Journal:  Adv Sci (Weinh)       Date:  2020-05-29       Impact factor: 16.806

3.  Exciting H2 Molecules for Graphene Functionalization.

Authors:  Line Kyhl; Régis Bisson; Richard Balog; Michael N Groves; Esben Leonhard Kolsbjerg; Andrew Martin Cassidy; Jakob Holm Jørgensen; Susanne Halkjær; Jill A Miwa; Antonija Grubišić Čabo; Thierry Angot; Philip Hofmann; Mohammad Alif Arman; Samuli Urpelainen; Paolo Lacovig; Luca Bignardi; Hendrik Bluhm; Jan Knudsen; Bjørk Hammer; Liv Hornekaer
Journal:  ACS Nano       Date:  2018-01-05       Impact factor: 15.881

Review 4.  Graph-Driven Reaction Discovery: Progress, Challenges, and Future Opportunities.

Authors:  Idil Ismail; Raphael Chantreau Majerus; Scott Habershon
Journal:  J Phys Chem A       Date:  2022-10-03       Impact factor: 2.944

5.  Expanding the Material Search Space for Multivalent Cathodes.

Authors:  Ann Rutt; Jimmy-Xuan Shen; Matthew Horton; Jiyoon Kim; Jerry Lin; Kristin A Persson
Journal:  ACS Appl Mater Interfaces       Date:  2022-09-22       Impact factor: 10.383

6.  Efficient Helium Separation with Two-Dimensional Metal-Organic Framework Fe/Ni-PTC: A Theoretical Study.

Authors:  Jingyuan Wang; Yixiang Li; Yanmei Yang; Yongqiang Li; Mingwen Zhao; Weifeng Li; Jing Guan; Yuanyuan Qu
Journal:  Membranes (Basel)       Date:  2021-11-26
  6 in total

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