Literature DB >> 27607692

Light-sheet microscopy with digital Fourier analysis measures transport properties over large field-of-view.

Devynn M Wulstein, Kathryn E Regan, Rae M Robertson-Anderson, Ryan McGorty.   

Abstract

Using light-sheet microscopy combined with digital Fourier methods we probe the dynamics of colloidal samples and DNA molecules. This combination, referred to as selective-plane illumination differential dynamic microscopy (SPIDDM), has the benefit of optical sectioning to study, with minimal photobleaching, thick samples allowing us to measure the diffusivity of colloidal particles at high volume fractions. Further, SPIDDM exploits the inherent spatially-varying thickness of Gaussian light-sheets. Where the excitation sheet is most focused, we capture high spatial frequency dynamics as the signal-to-background is high. In thicker regions, we capture the slower dynamics as diffusion out of the sheet takes longer.

Year:  2016        PMID: 27607692      PMCID: PMC5946909          DOI: 10.1364/OE.24.020881

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  43 in total

1.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

2.  Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.

Authors:  Raju Tomer; Khaled Khairy; Fernando Amat; Philipp J Keller
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

3.  Differential dynamic microscopy of weakly scattering and polydisperse protein-rich clusters.

Authors:  Mohammad S Safari; Maria A Vorontsova; Ryan Poling-Skutvik; Peter G Vekilov; Jacinta C Conrad
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-10-23

4.  Dark-field differential dynamic microscopy.

Authors:  Alexandra V Bayles; Todd M Squires; Matthew E Helgeson
Journal:  Soft Matter       Date:  2016-02-28       Impact factor: 3.679

5.  Diffusion of isolated DNA molecules: dependence on length and topology.

Authors:  Rae M Robertson; Stephan Laib; Douglas E Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-28       Impact factor: 11.205

6.  Thermal vestige of the zero-temperature jamming transition.

Authors:  Zexin Zhang; Ning Xu; Daniel T N Chen; Peter Yunker; Ahmed M Alsayed; Kevin B Aptowicz; Piotr Habdas; Andrea J Liu; Sidney R Nagel; Arjun G Yodh
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

7.  Accurate detection and complete tracking of large populations of features in three dimensions.

Authors:  Yongxiang Gao; Maria L Kilfoil
Journal:  Opt Express       Date:  2009-03-16       Impact factor: 3.894

8.  Scattering information obtained by optical microscopy: differential dynamic microscopy and beyond.

Authors:  Fabio Giavazzi; Doriano Brogioli; Veronique Trappe; Tommaso Bellini; Roberto Cerbino
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-21

9.  Light-sheet fluorescence microscopy for quantitative biology.

Authors:  Ernst H K Stelzer
Journal:  Nat Methods       Date:  2015-01       Impact factor: 28.547

10.  Open-top selective plane illumination microscope for conventionally mounted specimens.

Authors:  Ryan McGorty; Harrison Liu; Daichi Kamiyama; Zhiqiang Dong; Su Guo; Bo Huang
Journal:  Opt Express       Date:  2015-06-15       Impact factor: 3.894

View more
  5 in total

1.  Point-spread function engineering enhances digital Fourier microscopy.

Authors:  Devynn M Wulstein; Ryan McGorty
Journal:  Opt Lett       Date:  2017-11-15       Impact factor: 3.776

2.  Image windowing mitigates edge effects in Differential Dynamic Microscopy.

Authors:  Fabio Giavazzi; Paolo Edera; Peter J Lu; Roberto Cerbino
Journal:  Eur Phys J E Soft Matter       Date:  2017-11-09       Impact factor: 1.890

3.  Filament Rigidity Vies with Mesh Size in Determining Anomalous Diffusion in Cytoskeleton.

Authors:  Sylas J Anderson; Christelle Matsuda; Jonathan Garamella; Karthik Reddy Peddireddy; Rae M Robertson-Anderson; Ryan McGorty
Journal:  Biomacromolecules       Date:  2019-11-15       Impact factor: 6.988

4.  Subtle changes in crosslinking drive diverse anomalous transport characteristics in actin-microtubule networks.

Authors:  S J Anderson; J Garamella; S Adalbert; R J McGorty; R M Robertson-Anderson
Journal:  Soft Matter       Date:  2021-04-28       Impact factor: 3.679

5.  Topology-dependent anomalous dynamics of ring and linear DNA are sensitive to cytoskeleton crosslinking.

Authors:  Devynn M Wulstein; Kathryn E Regan; Jonathan Garamella; Ryan J McGorty; Rae M Robertson-Anderson
Journal:  Sci Adv       Date:  2019-12-13       Impact factor: 14.136

  5 in total

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