Literature DB >> 27602727

Detection of Sphingomyelin Clusters by Raman Spectroscopy.

Koichiro Shirota1, Kiyoshi Yagi2, Takehiko Inaba1, Pai-Chi Li2, Michio Murata3, Yuji Sugita2, Toshihide Kobayashi4.   

Abstract

Sphingomyelin (SM) is a major sphingolipid in mammalian cells that forms specific lipid domains in combination with cholesterol (Chol). Using molecular-dynamics simulation and density functional theory calculation, we identified a characteristic Raman band of SM at ∼1643 cm(-1) as amide I of the SM cluster. Experimental results indicate that this band is sensitive to the hydration of SM and the presence of Chol. We showed that this amide I Raman band can be utilized to examine the membrane distribution of SM. Similarly to SM, ceramide phosphoethanolamine (CerPE) exhibited an amide I Raman band in almost the same region, although CerPE lacks three methyl groups in the phosphocholine moiety of SM. In contrast to SM, the amide I band of CerPE was not affected by Chol, suggesting the importance of the methyl groups of SM in the SM-Chol interaction.
Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27602727      PMCID: PMC5018142          DOI: 10.1016/j.bpj.2016.07.035

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  33 in total

1.  Nanomechanical recognition of sphingomyelin-rich membrane domains by atomic force microscopy.

Authors:  Tong Wang; Hidehiko Shogomori; Masahiko Hara; Taro Yamada; Toshihide Kobayashi
Journal:  Biochemistry       Date:  2011-12-15       Impact factor: 3.162

2.  Exclusion of a transmembrane-type peptide from ordered-lipid domains (rafts) detected by fluorescence quenching: extension of quenching analysis to account for the effects of domain size and domain boundaries.

Authors:  Michael E Fastenberg; Hidehiko Shogomori; Xiaolian Xu; Deborah A Brown; Erwin London
Journal:  Biochemistry       Date:  2003-10-28       Impact factor: 3.162

3.  Canonical dynamics: Equilibrium phase-space distributions.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1985-03

4.  Laser Raman investigation of the effect of cholesterol on conformational changes in dipalmitoyl lecithin multilayers.

Authors:  J L Lippert; W L Peticolas
Journal:  Proc Natl Acad Sci U S A       Date:  1971-07       Impact factor: 11.205

5.  Structural studies of biological membranes and related model systems by Raman spectroscopy. Sphingomyelin and 1,2-dilauroyl phosphatidylethanolamine.

Authors: 
Journal:  Biochim Biophys Acta       Date:  1975-12-16

6.  Structure and thermotropic properties of hydrated N-stearoyl sphingomyelin bilayer membranes.

Authors:  P R Maulik; P K Sripada; G G Shipley
Journal:  Biochim Biophys Acta       Date:  1991-02-25

7.  N-palmitoyl sphingomyelin bilayers: structure and interactions with cholesterol and dipalmitoylphosphatidylcholine.

Authors:  P R Maulik; G G Shipley
Journal:  Biochemistry       Date:  1996-06-18       Impact factor: 3.162

8.  CHARMM all-atom additive force field for sphingomyelin: elucidation of hydrogen bonding and of positive curvature.

Authors:  Richard M Venable; Alexander J Sodt; Brent Rogaski; Huan Rui; Elizabeth Hatcher; Alexander D MacKerell; Richard W Pastor; Jeffery B Klauda
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

9.  Direct determination by Raman scattering of the conformation of the choline group in phospholipid bilayers.

Authors:  H Akutsu
Journal:  Biochemistry       Date:  1981-12-22       Impact factor: 3.162

10.  Interaction of cholesterol with sphingomyelin in monolayers and vesicles.

Authors:  R Bittman; C R Kasireddy; P Mattjus; J P Slotte
Journal:  Biochemistry       Date:  1994-10-04       Impact factor: 3.162

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  11 in total

1.  Cholesterol-Induced Conformational Change in the Sphingomyelin Headgroup.

Authors:  Shinya Hanashima; Kazuhiro Murakami; Michihiro Yura; Yo Yano; Yuichi Umegawa; Hiroshi Tsuchikawa; Nobuaki Matsumori; Sangjae Seo; Wataru Shinoda; Michio Murata
Journal:  Biophys J       Date:  2019-06-25       Impact factor: 4.033

2.  Molecular substructure of the liquid-ordered phase formed by sphingomyelin and cholesterol: sphingomyelin clusters forming nano-subdomains are a characteristic feature.

Authors:  Michio Murata; Nobuaki Matsumori; Masanao Kinoshita; Erwin London
Journal:  Biophys Rev       Date:  2022-06-11

3.  Raman spectroscopy and sciatic functional index (SFI) after low-level laser therapy (LLLT) in a rat sciatic nerve crush injury model.

Authors:  Melissa de Almeida Melo Maciel Mangueira; Egas Caparelli-Dáquer; Ozimo Pereira Gama Filho; Diogo Souza Ferreira Rubim de Assis; Janyeid Karla Castro Sousa; Willy Leite Lima; Antonio Luiz Barbosa Pinheiro; Landulfo Silveira; Nilton Maciel Mangueira
Journal:  Lasers Med Sci       Date:  2022-05-03       Impact factor: 2.555

4.  Raman Microspectroscopy Identifies Biochemical Activation Fingerprints in THP-1- and PBMC-Derived Macrophages.

Authors:  Nora Feuerer; Daniel A Carvajal Berrio; Florian Billing; Sören Segan; Martin Weiss; Ulrich Rothbauer; Julia Marzi; Katja Schenke-Layland
Journal:  Biomedicines       Date:  2022-04-25

Review 5.  Dynamic pattern generation in cell membranes: Current insights into membrane organization.

Authors:  Krishnan Raghunathan; Anne K Kenworthy
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-05-09       Impact factor: 3.747

6.  Formation of tubules and helical ribbons by ceramide phosphoethanolamine-containing membranes.

Authors:  Takehiko Inaba; Motohide Murate; Nario Tomishige; Yan-Fen Lee; Françoise Hullin-Matsuda; Brigitte Pollet; Nicolas Humbert; Yves Mély; Yasushi Sako; Peter Greimel; Toshihide Kobayashi
Journal:  Sci Rep       Date:  2019-04-09       Impact factor: 4.379

7.  Novel diagnostic and therapeutic techniques reveal changed metabolic profiles in recurrent focal segmental glomerulosclerosis.

Authors:  Janina Müller-Deile; George Sarau; Ahmed M Kotb; Christian Jaremenko; Ulrike E Rolle-Kampczyk; Christoph Daniel; Stefan Kalkhof; Silke H Christiansen; Mario Schiffer
Journal:  Sci Rep       Date:  2021-02-25       Impact factor: 4.379

8.  Low-flux scanning electron diffraction reveals substructures inside the ordered membrane domain.

Authors:  Masanao Kinoshita; Shimpei Yamaguchi; Nobuaki Matsumori
Journal:  Sci Rep       Date:  2020-12-21       Impact factor: 4.379

9.  Tauroursodeoxycholic Acid (TUDCA)-Lipid Interactions and Antioxidant Properties of TUDCA Studied in Model of Photoreceptor Membranes.

Authors:  Michał J Sabat; Anna M Wiśniewska-Becker; Michał Markiewicz; Katarzyna M Marzec; Jakub Dybas; Justyna Furso; Paweł Pabisz; Mariusz Duda; Anna M Pawlak
Journal:  Membranes (Basel)       Date:  2021-04-29

10.  Anharmonic Vibrational Analysis of Biomolecules and Solvated Molecules Using Hybrid QM/MM Computations.

Authors:  Kiyoshi Yagi; Kenta Yamada; Chigusa Kobayashi; Yuji Sugita
Journal:  J Chem Theory Comput       Date:  2019-02-21       Impact factor: 6.006

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