Aref Hosseini1, Kamran Ghaedi2, Somayeh Tanhaei3, Mazdak Ganjalikhani-Hakemi4, Shohreh Teimuri1, Masoud Etemadifar5, Mohammad Hossein Nasr Esfahani3. 1. Division of Cellular and Molecular Biology, Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran. 2. Division of Cellular and Molecular Biology, Department of Biology, Faculty of Sciences, University of Isfahan, Isfahan, Iran; Department of Cellular Biotechnology, Cell Science Research Center, Royan Institute for Biotechnology, ACECR, Isfahan, Iran. 3. Department of Cellular Biotechnology, Cell Science Research Center, Royan Institute for Biotechnology, ACECR, Isfahan, Iran. 4. Department of Immunology, Faculty of Medicine, Isfahan University of Medical Sciences, Isfahan, Iran. 5. Department of Neurology, School of Medicine, Isfahan University of Medical Sciences, Isfahan, Iran.
Abstract
OBJECTIVE: MicroRNAs (miRNA) are a class of non-coding RNAs which play key roles in post-transcriptional gene regulation. Previous studies indicate that miRNAs are dysregulated in patients with multiple sclerosis (MS). Th17 and regulatory T (Treg) cells are two subsets of CD4+T-cells which have critical functions in the onset and progression of MS. The current study seeks to distinguish fluctuations in expression of CD4+T-cell derived miR-223 during the relapsing-remitting (RR) phase of MS (RR-MS), as well as the expressions of Th17 and Treg cell markers. MATERIALS AND METHODS: This experimental study used real-time quantitative polymerase chain reaction (qRT-PCR) to evaluate CD4+ T cell derived miR-223 expression patterns in patients that experienced either of the RR-MS phases (n=40) compared to healthy controls (n=12), along with RNA markers for Th17 and Treg cells. We conducted flow cytometry analyses of forkhead box P3 (FOXP3) and RAR-related orphan receptor γt (RORγt) in CD4+T-cells. Putative and validated targets of miR-223 were investigated in the miRWalk and miRTarBase databases, respectively. RESULTS: miR-223 significantly upregulated in CD4+T-cells during the relapsing phase of RR-MS compared to the remitting phase (P=0.000) and healthy individuals (P=0.036). Expression of RORγt, a master transcription factor of Th17, upregulated in the relapsing phase, whereas FOXP3 upregulated in the remitting phase. Additionally, potential targets of miR-223, STAT1, FORKHEAD BOX O (FOXO1) and FOXO3 were predicted by in silico studies. CONCLUSION: miR-223 may have a potential role in MS progression. Therefore, suppression of miR-223 can be proposed as an appropriate approach to control progression of the relapsing phase of MS.
OBJECTIVE: MicroRNAs (miRNA) are a class of non-coding RNAs which play key roles in post-transcriptional gene regulation. Previous studies indicate that miRNAs are dysregulated in patients with multiple sclerosis (MS). Th17 and regulatory T (Treg) cells are two subsets of CD4+T-cells which have critical functions in the onset and progression of MS. The current study seeks to distinguish fluctuations in expression of CD4+T-cell derived miR-223 during the relapsing-remitting (RR) phase of MS (RR-MS), as well as the expressions of Th17 and Treg cell markers. MATERIALS AND METHODS: This experimental study used real-time quantitative polymerase chain reaction (qRT-PCR) to evaluate CD4+ T cell derived miR-223 expression patterns in patients that experienced either of the RR-MS phases (n=40) compared to healthy controls (n=12), along with RNA markers for Th17 and Treg cells. We conducted flow cytometry analyses of forkhead box P3 (FOXP3) and RAR-related orphan receptor γt (RORγt) in CD4+T-cells. Putative and validated targets of miR-223 were investigated in the miRWalk and miRTarBase databases, respectively. RESULTS:miR-223 significantly upregulated in CD4+T-cells during the relapsing phase of RR-MS compared to the remitting phase (P=0.000) and healthy individuals (P=0.036). Expression of RORγt, a master transcription factor of Th17, upregulated in the relapsing phase, whereas FOXP3 upregulated in the remitting phase. Additionally, potential targets of miR-223, STAT1, FORKHEAD BOX O (FOXO1) and FOXO3 were predicted by in silico studies. CONCLUSION:miR-223 may have a potential role in MS progression. Therefore, suppression of miR-223 can be proposed as an appropriate approach to control progression of the relapsing phase of MS.
Multiple sclerosis (MS) is an inflammatory autoimmune disease of the central nervous system with an unknown etiology (1,2). Development of MS depends on both genetic and environmental factors (3,4). The clinical features of MS contain variable patterns which change over time. Among the four different phases of MS, the relapsing-remitting (RR) phase is defined as a period of acute neurological dysfunction accompanied by a degree of recovery. This is the most frequent form of MS reported thus far. At the present time primary therapy for RR-MS is interferon-β (IFN-β) which reduces disease severity (5). RR-MS patients eventually develop the secondary progressive (SP) phase, characterized by symptom progression with frequent relapse courses which may not be seen in these types of MS patients. Persistence of these symptoms with constant progression leads to a severe phase termed the primary progressive (PP) phase of MS. Unfortunately there is no agreed definition for the relapsing-progression (RP) phase of MS; indeed, it is the intermediate between the relapsing phase and progressive onset (6).It is believed that the immune system in MS patients incorrectly views self-antigens as foreign,
eliciting a response against self (7). Migration of
autoreactive T cells from the blood-brain barrier
(BBB) and secretion of inflammatory cytokines
induces damage to myelin sheaths. Th17 cells
are the main effective cells for inflammation and
pathogenesis of MS due to the secretion of several
cytokines such as GM-CSF and IL-17 (8-10). On
the other hand, regulatory T cells (Treg), another
subset of CD4+
T-cells, inhibits autoimmune responses by mediating immunological tolerance to
self-antigens (11). Transforming growth factor-beta (TGF-β), IL-6, and IL-1 are required for Th17
differentiation (12-14), whereas IL-23 is critical
for maintenance and proliferation of Th17 cells
(15). RAR-related orphan receptor γt (RORγt) is
the main transcription factor in charge of Th17
differentiation which is encoded by the RORC
gene (16). However Treg cells require TGF-β and
IL-2 for differentiation from naïve CD4+ T-cells
(17). These cells are specified by forkhead box P3 (FOXP3) (18).MicroRNAs (miRNA) are a new class of endogenous, noncoding RNAs which regulate expression of most genes in animals and plants (19,20). Almost every facet of cellular activity such as differentiation, metabolism and apoptosis is affected by miRNAs (21,22). We have demonstrated that immune system disorders are often accompanied by dysregulation of miRNAs (21,23). For instance, miR-155 suppresses JARID2, a DNA binding protein which leads to activation of cytokine gene expression in Th17 (24).Dysregulation of miR-223 in autoimmune diseases such as MS, rheumatoid arthritis (RA) and Crohn’s disease (CD) makes it a valuable diagnostic marker. miR-223 is upregulated in T lymphocytes of RApatients (25), hence this miRNA is proposed to be a biomarker for diagnosis of early stage RApatients (26). Junker et al. (27) have reported upregulation of miR223 in active MS lesions. Also, upregulation of miR-223 in peripheral blood mononuclear cells (PBMCs) and Treg cells was reported (28,29). In contrast, downregulation of this miRNA has been reported in the serum of MS patients (30). To clarify the exact role of miR-223 in MS, we carried out this study to distinguish fluctuations in expression of CD4+T-cellderivedmiR-223 in RR-MS patients. The association of key transcription factors involved in development of Treg and Th17 cells with transcript levels of miR-223 was also considered. We used bioinformatics tools to reveal connotation of this miRNA in pathways of Th17 and Treg differentiation.
Materials and Methods
Subjects
The Institutional Review Board of Royan Institute approved the study protocol and informed consent form (Project Id. No. 91000618). All study participants provided written consent for participation. In this experimental study, 40 patients diagnosed with MS (age range: 19 to 46 years) were evaluated according to McDonald criteria (31) by a neurologist at the MS Clinic of Al-Zahra Hospital, affiliated with Isfahan University of Medical Sciences, Isfahan, Iran. From these, there were 20 patients in the relapsing phase and 20 in the remitting phase of MS. Following provision of informed consent, each patient provided 10 mL of blood, which was collected in tubes that contained Ethylenediamine-tetraacetic acid (EDTA). For patients in the relapsing phase, blood samples were taken before prescribing immunomodulatory medicine. However, remitting phase patients had previously consumed CinnoVex (IFN-β). Patients in the remitting phase provided blood samples prior to receiving the next dose of medicine. A total of 12 blood samples were collected from age and sex matched healthy control individuals who had no evidence of any allergies or infections.
Cell separation and RNA extraction
The obtained blood samples were immediately placed on ice and transferred to the laboratory for analysis. We used a two-step process to separate the CD4+ T-cells from the whole blood. In the first step, PBMCs were isolated by density gradient lymphoprep (STEMCELL Technologies, USA) according to the manufacturer’s instructions. In the second step, CD4+T-cells were isolated on PBMC by magneticactivated cell sorting (MACS) with a CD4+T-cell isolation Kit II human (Miltenyi Biotec, Germany) based on the manufacturer’s protocol. This kit is an indirect magnetic labeling system for the isolation of untouched CD4+Thelper cells from human PBMC by elimination of cells that contain CD8, CD14, CD16, CD19, CD36, CD56, CD123, TCRγ/δ, and glycophorin A with a purity of greater than 95%. Total RNA was extracted with the TRizol® reagent (Invitrogen, USA) from CD4+ T-cells according to the manufacturer’s protocol. The quantity and quality of extracted RNA were verified according to the ratio of absorbance at a 260/280 nm as measured by a NanoDrop spectrophotometer (Nanodrop 1000, Thermo Scientific, USA), and by electrophoresis on a 1% agarose gel. Total RNA samples were treated with RNA-free DNase (Fermentas, Ukraine) in order to eliminate trace amounts of contaminated DNA prior to real-time quantitative polymerase chain reaction (qRT-PCR) analysis.
cDNA synthesis and quantitative real-time polymerase chain reaction
Total RNA samples were divided into two parts, one batch for mRNA expression analysis of key factors in Treg and Th17 cell development and the second for the miRNA expression assay. A universal cDNA synthesis kit (Exiqon, Denmark) was used for cDNA synthesis of miR-223, with RNU48 as the reference gene (32) through a poly A tailing manner based on the manufacturer’s leaflet. Pre-designed specific primers of miR-223 and RNU48 for qRTPCR were supplied by Pars Genome Company (Tehran, Iran). An ABI PRISM 7500 instrument (Applied Biosystems, USA) was used for the qRT-PCR analysis. All reactions were performed in triplicate using standard protocols. CDNA synthesis of key factors TGF-β, INTERLEUKIN 23R (IL23R) and IL17a was performed with a RevertAid First Strand cDNA synthesis Kit (Thermo Scientific, USA) according to the manufacturer’s protocol. The expression level of each gene was normalized vs. 18srRNA in the same sample. All measurements were performed for three independent replicates.
Electrophoresis and T/A cloning
The specificity of the miR-223 primers were assessed by electrophoresis of real time PCR products on a 12% poly acrylamide gel. For exact sequence matching of miR-223 to our product, the resultant electrophoresis bands were T/A cloned into a pTZ57R/T vector (Thermo Scientific) and sent for sequencing.
Flow cytometry
MACS-isolated CD4+ T-cells were evaluated for
RORγt in Th-17 cells and FOXP3 expression in
Treg cells. Briefly, the isolated CD4+ T-cells were
fixed in 4% paraformaldehyde in phosphate buffer
saline (PBS) for 20 minutes at room temperature,
after which they were permeabilized in 0.2% Triton X-100 for 15 minutes. Then, samples were resuspended in PBS that contained bovineserum albumin (BSA, 5 mg/mL) and subsequently stained
by mouse anti-humanFOXP3-PE, rat anti-human
ROR γ(t)-PE, and mouse anti-humanCD4-Alexa
Fluor® 488 against the isotype controls (all antibodies were purchased from eBioscience, USA).
All experiments were run on a FACSCalibur flow
cytometer (BD Biosciences, USA) and analyzed
by BD CellQuest Pro software (version 0.3).
Green fluorescence was detected in a fluorescence
detector 1 (FL-1). Red fluorescence was detected
in FL-2.
Statistical analysis
We used the Statistical Program for Social Sciences (SPSS) software (version 18) for all statistical tests. One-way ANOVA was utilized for comparison groups. A P<0.05 was considered statistically significant for all experiments. In order to identify validated and predicted targets of miR-223, we searched the miRTarBase (33) and miRWalk (34) databases, respectively.Integrative prediction analysis of ten databases by different algorithms was provided in the miRWalk database. The RNA hybrid database (35) was utilized to determine the interaction between miRNA and target mRNA. For elimination of target mRNAs which were not present in CD4+ T-cells, the presence of miR-223 targets in the thymus and lymph nodes was validated by the Unigene database (http://www.ncbi.nlm.nih.gov/unigene/). We used CircuitsDB (36) to explore transcription factors which could affect the miR-223 gene. Databases for annotation, visualization and integrated discovery (DAVID) (37) were implemented to reveal the most applicable pathways and molecular networks with the miR-223 targetome which were effective in Th17 and Treg differentiation.
Results
Upregulation of miR-223 in CD4 + T cells in the relapsing phase of relapsing-remitting multiple sclerosis
MiR-223 expression levels were measured in subjects’ CD4+T-cells. We observed significant upregulation of miRNA in the relapsing phase of RR-MS compared to the remitting (P=0.000) phase and healthy controls (P=0.036). In contrast, miR-223 showed a nonsignificant downregulation in the remitting phase compared to the controls (P=0.071, Fig.1A).
Fig.1
Expression of miR-223 and the percentage of Th17 and regulatory T (Treg) cells in CD4+T-cells. A. miR-223 significantly upregulated in the relapsing phase of relapsing-remitting multiple sclerosis (RR-MS). There was no significant difference between the remitting phase and healthy subjects, B and C. Flow cytometry results revealed an increased percentage of Th17 cells [RAR-related Orphan Receptor γt (RORγt)] in the relapsing phase.
In the remitting phase, there was an elevated percentage of Treg cells [FORKHEAD BOX P3 (FOXP3)]. *; P<0.05, **; P<0.01, and ***; P<0.005, non-parametric Mann-Whitney t test.
RAR-related orphan receptor γt+ CD4+ T-cells elevated in the relapsing phase, whereas
forkhead box P3+ CD4+ T-cells increased in
the remitting phase of relapsing-remitting
multiple sclerosis
According to flow cytometry results, the percentage of CD4+ T cells that contained RORγt
as a key transcription factor of Th17 in the
relapsing group significantly elevated compared to the remitting (P=0.0002) and control
(P=0.0003) groups. CD4+ T-cells that carried
FOXP3 as the main transcription factor for Treg
cells significantly increased in the remitting
phase compared to the relapsing (P=0.003) and
control (P=0.001) groups (Fig.1B, C). All samples had a 92-97% purity for the CD4+
marker
(data not shown).Expression of miR-223 and the percentage of Th17 and regulatory T (Treg) cells in CD4+T-cells. A. miR-223 significantly upregulated in the relapsing phase of relapsing-remitting multiple sclerosis (RR-MS). There was no significant difference between the remitting phase and healthy subjects, B and C. Flow cytometry results revealed an increased percentage of Th17 cells [RAR-related Orphan Receptor γt (RORγt)] in the relapsing phase.In the remitting phase, there was an elevated percentage of Treg cells [FORKHEAD BOX P3 (FOXP3)]. *; P<0.05, **; P<0.01, and ***; P<0.005, non-parametric Mann-Whitney t test.
Dysregulation of Il-17a, Il-23R and TGF-β at
the RNA level in CD4+ T-cells of relapsing-remitting multiple sclerosis patients
We used qRT-PCR to evaluate the expression
levels of TGF-β and Il-23R, as main factors that
participate in Th17 and/or Treg pathogenicity. We
also evaluated Il-17a, as a Th17 cytokine marker.
There was a significantly elevated transcript level
of TGF-β in the relapsing (P=0.008) and remitting
(P=0.029) groups compared to the control group.
However, the difference between the relapsing and
remitting groups was not significant (P=0.573).
Expression of Il-23R increased in the relapsing
phase versus the remitting phase (P=0.042), however this value was not significant between the relapsing and control (P=0.058) groups and between
the remitting and control groups (P=0.815). Il-17a
RNA levels significantly elevated in the relapsing compared to the remitting (P=0.023) group,
however differences between the relapsing phase
and control (P=0.329) groups, as well as between
the remitting phase and control group (P=0.694,
Fig.2) were not significant.
Fig.2
Relative expression levels of A. Interleukin 17a (IL-17a), B. Il-23R which represent Th17, and C. TGF-β activity that could positively affect both Th17 and regulatory T (Treg) cells. *; P<0.05 and **; P<0.01, non-parametric Mann-Whitney t test.
Relative expression levels of A. Interleukin 17a (IL-17a), B. Il-23R which represent Th17, and C. TGF-β activity that could positively affect both Th17 and regulatory T (Treg) cells. *; P<0.05 and **; P<0.01, non-parametric Mann-Whitney t test.
Molecular signaling pathway enrichment
investigation of miR-223 targetome proposed
pathogenesis of miR-223 through induction of
Th17 and repression of regulatory T cells
We performed molecular signaling pathway enrichment analysis to identify the potential role of miR-223 in MS pathogenicity by affecting Th17 and Treg differentiation. Based on miRWalk and miRTarBase databases, we identified 339 predicted and 24 validated target mRNAs (Table 1). From all predicted mRNAs determined by integrative prediction analysis in the miRWalk database, we chose those mRNAs which had been approved by at least 6 prediction databases. By using the UniGene database, we determined that 18 of the validated target mRNAs and 198 of the predicted target mRNAs expressed in the thymus and lymph nodes. Forkhead box O (FOXO1), FOXO3 and STAT1 mRNAs were considered as three mRNA targets of miR-223 that had vital functions for Th17 and Treg differentiation. Possible interactions between miR-223 and FOXO1, FOXO3 and STAT1 based on the RNAhybrid database are depicted in Figure 3. Based on CircuitsDB, 11 transcription factors related to the miR-223 gene promoter were identified (Table 2). We imputed the miR-223 targets that expressed in the lymph nodes and thymus as well as participated in Th17 and Treg differentiation into the functional annotation tool of DAVID. We elucidated a chemokine signaling pathway as an effector pathway in Th17 and Treg differentiation which could be modulated by miR-223 (Fig.4). Furthermore, our computational data have predicted two binding sites on the miR-223 promoter for STAT1 (Fig.5). As illustrated, STAT1 has two binding sites on the hsa-mir-223 promoter while, in mice this transcription factor has five binding sites in the respective promoter (Fig.6).
Table 1
Predicted and validated targets of miR-223
Predicted target of miR-223
MAP1B
FGFR2
SLC8A1
KHDRBS1
RASSF6
GPM6B
NPY1R
CYP26B1
CLDN8
SLC9A2
NFIA
FOXO3
STIM1
MAP3K2
SGMS2
CCNT2
NRF1
DHX33
XPR1
SLC20A1
FBXW7
NUP210
TBX15
ARPP-19
E2F1
ANKRD52
ATP2B1
KIAA1161
DHRS3
SNCA
PTBP2
EBF3
TSPAN7
CEACAM7
ECT2
CCDC95
ROR2
AARS2
ZBTB47
SOX9
RASA1
SETBP1
UBE2N
TMED10
UBR1
C13orf15
C2orf64
WDR35
ORAI3
SP3
SCN3A
KIAA1279
YWHAG
LDB3
LIPH
GTPBP8
PAFAH1B1
ARRDC3
COPS2
SP3
HSP90B1
SACS
DERL1
AKAP10
SLC25A43
OLA1
ST8SIA3
KLHL14
KL
STAT1
DUSP10
C11orf77
C10orf97
RWDD2A
ZCCHC5
LRP12
PDZD11
FNIP2
QKI
TRPS1
PDS5B
TRIB2
C13orf18
KLF12
EPHA3
ANXA6
ARMCX1
DIP2B
AKAP6
USF1
ANKRD17
HHEX
RNF34
ADCY7
FAM13C1
ICAM1
HOOK1
ZBTB4
SLC4A7
ADIPOR2
FBXO8
HLF
TMEM49
NLRP3
RSBN1L
IFNAR1
SNX7
ZBTB26
SPTLC2
C4orf31
STK39
IL6ST
TBC1D10A
SLC26A7
RRAS2
RBPJ
PDE3B
SLC4A5
BAG2
NARG2
RILPL1
KPNA1
SLC37A3
SLC15A4
CLSTN1
RBPJ
C22orf28
PURA
TSGA14
TBC1D17
LMO2
RHOB
BRMS1L
GTSF1
KIFAP3
INHBB
PTPLAD1
ABCD4
ENTPD5
MYST3
CRIM1
LAMB1
MAEL
FOXN4
FOXO1
INPP5B
CTDSPL2
SELK
GREB1
NAT13
PCTK2
MYH10
ABHD13
CNP
EPB41L3
ITPR3
CMPK1
RAP2A
TRAM2
ADAM33
RPS6KB1
MYO5B
BAZ1B
PIGU
SEPT6
GALNTL4
ABCB1
DPF2
ULK2
GAN
CBFB
SLC11A2
MAFB
ZPLD1
MESDC2
KPNA3
PITPNA
RGS2
KIAA0226
CLPB
ACVR2A
PAX9
TCERG1
C20orf160
PHLPP
RND3
NUP54
RNF4
KIAA0256
SBF2
RAB10
LOC51035
RBM16
SFRS12
NUP160
LBR
PLXNB1
GUF1
SART3
SMC1A
RER1
PHF20L1
FAM5C
MPP7
SR140
MED11
ATP7A
BRUNOL5
TOX
SNN
AP1GBP1
PKNOX1
CALML4
CSF2
HEY2
CAPRIN1
POLE3
ATXN2
ProSAPiP1
UTP15
LIN54
ARMC1
DNM1L
CWF19L2
ABCA4
MBNL1
PPARA
SCN2A
MTSS1
KIAA1853
MTPN
CDKN2AIP
CDH9
FAM81A
EML2
MBNL1
FAM29A
SRR
TRIM14
TMTC4
CREB1
CENPN
CDH11
TTBK2
CNOT6L
ME1
ELOVL2
SLC39A8
MFAP3L
PKP4
PARP1
ANKH
TSPAN5
ZNF417
RNF144B
MEF2C
ULK4
ZFYVE20
TOMM70A
PEX3
XRRA1
NLGN2
CDH12
CTNNA2
WDR40A
ARVCF
RALGPS2
ARL6IP2
SRGAP3
SLC4A4
CTSL2
KIAA1468
RASGRP1
SEPT10
ZZZ3
MKLN1
USP40
PAPD5
RABGAP1L
CBLB
RNF145
BAI3
CDKN1B
CYB5A
ATRNL1
MMP16
OGFOD1
DKFZP686E2158
RP13102H20.1
ADAM9
EFNA1
PURB
TUBA1B
DAG1
SLITRK5
MPZ
PGM2
KLHL25
FAT
DPM2
ALCAM
RALA
ZNF238
MGC24039
PKD2L2
MSR1
RBM22
MRPS25
CPEB3
VNN1
F3
SCN1A
CEACAM5
CLEC14A
BRPF3
MX1
POLR3E
SIAH1
NFIB
C3orf15
F9
PRDM1
NEBL
C15orf26
EIF2C2
ZFHX3
CEP72
SPATA20
SLC17A7
KBTBD6
ACSL3
IFIH1
SORBS1
SPRED1
GOLGA1
ATP1B1
MOSPD1
REEP1
RCN2
Validated targets of miR-223
E2F1
MEF2C
NFIA
Lpin2
IGF1R
EPB41L3
FOXO1
SCARB1
SMARCD1
IRS1
RHOB
STMN1
Arid4b
CHUK
LIF
SLC2A4
HSP90B1
PARP1
ARTN
SP3
Fig.3
Predicted target sites for miR-223. Potential target site at the 3´-UTR of the FORKHEAD BOX O1 (FOXO1), FOXO3 and STAT1 genes.
Table 2
Transcription factors which could regulate miR-223 expression by binding to its promoter
Transcription factors
STAT5A
TEF-1
AML1
GATA
ETS
STAT1
GABP
LEF1
ICSBP
NF-Y
C/EBPBETA
Fig.4
Chemokine signaling pathway. Red stars indicate predicted and
validated targets of miR-223 in this pathway. STAT1 and FORKHEAD
BOX O (FOXO) proteins by induction of Th1 and regulatory T (Treg)
cells, respectively, could inhibit Th17 differentiation.
Fig.5
Schematic interactions of miR-223. Based on all databases
used in this study, miR-223 was regulated by interferon-beta
(IFN-β) by means of JAK1 and STAT1. miR-223 could regulate
STAT1, forkhead box O1 (FOXO1) and FOXO3 as its targets.
Fig.6
STAT1 binding sites on the hsa-mir-223 promoter sequence. A. STAT1 has two binding sites on the mir-223 promoter
which bind to the CACTTCC sequence in humans and B. In mice,
this transcription factor has five binding sites by a different sequence, ACTTCC. These data are based on CircuitsDB.
Predicted and validated targets of miR-223Predicted target sites for miR-223. Potential target site at the 3´-UTR of the FORKHEAD BOX O1 (FOXO1), FOXO3 and STAT1 genes.Transcription factors which could regulate miR-223 expression by binding to its promoterChemokine signaling pathway. Red stars indicate predicted and
validated targets of miR-223 in this pathway. STAT1 and FORKHEAD
BOX O (FOXO) proteins by induction of Th1 and regulatory T (Treg)
cells, respectively, could inhibit Th17 differentiation.Schematic interactions of miR-223. Based on all databases
used in this study, miR-223 was regulated by interferon-beta
(IFN-β) by means of JAK1 and STAT1. miR-223 could regulate
STAT1, forkhead box O1 (FOXO1) and FOXO3 as its targets.STAT1 binding sites on the hsa-mir-223 promoter sequence. A. STAT1 has two binding sites on the mir-223 promoter
which bind to the CACTTCC sequence in humans and B. In mice,
this transcription factor has five binding sites by a different sequence, ACTTCC. These data are based on CircuitsDB.
Discussion
In autoimmune diseases such as MS, the balance
between Th17 and Treg cells is destroyed. However, miRNAs are critical post-transcription regulators that can modify differentiation pathways and potentially play a role in controlling the Th17/Treg
balance.Here, we studied the spatial expression of
CD4+ T-cell derived miR-223 in the remitting
and relapsing phases of RR-MS patients. Finding an association between the expressions of
markers for two of the most critical cells in autoimmune diseases (Th17 and Treg) and transcript levels of miR-223 in CD4+ T-cells would
expand our knowledge about the development
of MS. We used bioinformatics methods to
evaluate a possible mechanism where miR-223
affected Th17/Treg differentiation. Based on
the predicted and validated targets of miR-223,
we observed that STAT1, FOXO1 and FOXO3
were considered miR-223 targets in MS. Up-
regulation of miR-223 in CD4+ T-cells from
the relapsing phase of MS agreed with previous
studies which showed increased expression of
miR-223 in active brain lesions, PBMCs, and
Treg cells of MS patients (27,38). Upregulation of this miRNA in T-cells of RA was previously reported (39). In contrast, miR-223 expression reportedly decreased in serum of MS patients (29). This discrepancy might reflect other functions for miRNA in serum and HDL (40,41).The main product of Th1, IFN-γ, is believed to be one of the most active suppressors for Th17 differentiation. In the absence of IFN-γ or its receptor, there will be intensified susceptibility to experimental autoimmune encephalitis (EAE) which is a common mouse model for MS (42). Binding of IFN-γ to its surface receptor will initiate the JAK/ STAT signaling cascade, leading to activation of STAT1 and to a lesser extent, STAT3 (43). Subsequently, STAT1 induces T-bet, a transcription factor which initiates Th1 lineage development (44). Activation of STAT1 causes inhibition of Th17 by means of both T-bet dependent and independent mechanisms (45). Based on miRWalk-database prediction, STAT1 is modulated by miR-223. miR223 appears to enhance Th17 activity by suppressing STAT1. Interestingly, STAT1 which itself is a target of miR-223, could able to regulate the expression of this miRNA.As previously mentioned, the remitting group received INF-β as an immunomodulatory drug (46). IFN-β, by binding to its receptor, led to activation of JAK1, which subsequently caused phosphorylation and activation of STAT1 (47). Therefore, we speculated that STAT1 and miR-223 acted contrary to each other in terms of expression pattern and control of the Treg/Th17 balance. In agreement to our studies, Moles et al. (48) reported that in STAT1 is a target of target of miR-223.Based on CircuitsDB, we have shown that there were two basic differences between humans and mice. MiR-223 has a different promoter sequence and STAT1 has different binding sites in the two species.Two other predicted targets of miR-223 are FOXO1 and FOXO3. FOXO1 has been validated as a target of miR-223 (49). FOXO proteins are able to bind to the FOXP3 promoter and induce Treg cells. Mice with T cell–specific deletion of both FOXO1 and FOXO3 have inadequate numbers of Treg cells (50). In contrast, inhibition of FOXO seems critical for Th17 development (51). Resistance to EAE in mice significantly increases by deletion of FOXO3 (52). We have expected that the inhibition of FOXO1 and FOXO3 by means of miR-223 could cause suppression of Treg cells and promote Th17 cells.Based on flow cytometry results, FOXP3 protein significantly overexpressed in the remitting phase compared to the relapsing and control groups. The RORγt protein significantly overexpressed in the relapsing phase compared to the other phases.Expression levels of Il-23R and IL-17A are associated with Th17 cells. IL-23 is required for Th17 differentiation. Therefore increased IL-17A, IL23R mRNAs in the relapsing group has resulted in increased numbers of Th17 cells. Upregulation of TGF-β in both the relapsing and remitting patients is intriguing. This ambiguous pattern can be explained since TGF-β is required for both Th17 and Treg cell differentiation (53,54).
Conclusion
In this study, we observed upregulation of CD4+T-cell derived miR-223 in the relapsing phase of RR-MS along with elevated numbers of Th17 cells and decreased Treg cells. In silico molecular enrichment analysis has shown a potential role of miR-223 in Th17 and Treg cell differentiation via the chemokine signaling pathway. However, further in vitro and in vivo experiments are needed to confirm these observations.
Authors: Thelma M Escobar; Chrysi Kanellopoulou; David G Kugler; Gokhul Kilaru; Cuong K Nguyen; Vijayaraj Nagarajan; Ravikiran K Bhairavabhotla; Daniel Northrup; Rami Zahr; Patrick Burr; Xiuhuai Liu; Keji Zhao; Alan Sher; Dragana Jankovic; Jinfang Zhu; Stefan A Muljo Journal: Immunity Date: 2014-05-22 Impact factor: 31.745
Authors: Camille A Juźwik; Sienna Drake; Marc-André Lécuyer; Radia Marie Johnson; Barbara Morquette; Yang Zhang; Marc Charabati; Selena M Sagan; Amit Bar-Or; Alexandre Prat; Alyson E Fournier Journal: Sci Rep Date: 2018-09-07 Impact factor: 4.379