Literature DB >> 27599514

Whole genome SNP scanning of snow sheep (Ovis nivicola).

T E Deniskova1, I M Okhlopkov2,3, A A Sermyagin2, E A Gladyr'2, V A Bagirov2, J Sölkner4, N V Mamaev3, G Brem2,5, N A Zinov'eva2.   

Abstract

This is the first report performing the whole genome SNP scanning of snow sheep (Ovis nivicola). Samples of snow sheep (n = 18) collected in six different regions of the Republic of Sakha (Yakutia) from 64° to 71° N. For SNP genotyping, we applied Ovine 50K SNP BeadChip (Illumina, United States), designed for domestic sheep. The total number of genotyped SNPs (call rate 90%) was 47796 (88.1% of total SNPs), wherein 1006 SNPs were polymorphic (2.1%). Principal component analysis (PCA) showed the clear differentiation within the species O. nivicola: studied individuals were distributed among five distinct arrays corresponding to the geographical locations of sampling points. Our results demonstrate that the DNA chip designed for domestic sheep can be successfully used to study the allele pool and the genetic structure of snow sheep populations.

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Year:  2016        PMID： 27599514     DOI： 10.1134/S1607672916040141

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN： 1607-6729            Impact factor:   0.788


  9 in total

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Authors:  G Evanno; S Regnaut; J Goudet
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4.  Gene mapping in the wild with SNPs: guidelines and future directions.

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5.  Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms.

Authors:  J E Seeb; G Carvalho; L Hauser; K Naish; S Roberts; L W Seeb
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Authors:  J M Miller; J Poissant; J W Kijas; D W Coltman
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8.  Phylogenetic analysis of snow sheep (Ovis nivicola) and closely related taxa.

Authors:  T D Bunch; C Wu; Y-P Zhang; S Wang
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9.  Second-generation PLINK: rising to the challenge of larger and richer datasets.

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  9 in total
  2 in total

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Journal:  Genome Biol Evol       Date:  2020-08-01       Impact factor: 3.416

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Journal:  PLoS One       Date:  2018-11-30       Impact factor: 3.240
  2 in total

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