Literature DB >> 27596011

The miRNA targetome of coronary artery disease is perturbed by functional polymorphisms identified and prioritized by in-depth bioinformatics analyses exploiting genome-wide association studies.

Milad Bastami1, Ziba Nariman-Saleh-Fam1, Zahra Saadatian2, Lida Nariman-Saleh-Fam3, Mir Davood Omrani2, Sayyed Mohammad Hossein Ghaderian4, Andrea Masotti5.   

Abstract

In recent years, genome-wide association studies (GWAS) have made great progress in elucidating the genetic influence on complex traits. An overwhelming number of GWAS signals resides in regulatory elements, therefore most post-GWAS studies focused only on transcriptional regulatory variants. However, recent findings have expanded the spectrum of trait/disease-associated regulatory variants beyond transcriptional level and highlighted the importance of post-transcriptional variants like those in miRNA targetome. The present work integrated genome-wide association data of coronary artery disease (CAD) with population-specific linkage disequilibrium structures from 1000 Genomes Project to map disease associations to miRNA targetome. Moreover, we performed a variety of functional prediction analyses to prioritize disease-associated variants (DAVs) influencing miRNA targetome and in-silico analyses to get insights into their functional significance. In conclusion, although the role of miRNA targetome variations in the development of CAD still has to be fully elucidated, we provided a systematic bioinformatics approach to the miRNA targetome variations in CAD. The results of this study will be valuable for researchers interested in the identification of CAD GWAS signals that may implicate polymorphic miRNA targeting.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  1000 genomes project; Coronary artery disease; Genome wide association study; Single nucleotide polymorphism; miRNA

Mesh:

Substances:

Year:  2016        PMID: 27596011     DOI: 10.1016/j.gene.2016.08.054

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  5 in total

1.  A post-GWAS analysis of predicted regulatory variants and tuberculosis susceptibility.

Authors:  Caitlin Uren; Brenna M Henn; Andre Franke; Michael Wittig; Paul D van Helden; Eileen G Hoal; Marlo Möller
Journal:  PLoS One       Date:  2017-04-06       Impact factor: 3.240

Review 2.  Integrating Genes Affecting Coronary Artery Disease in Functional Networks by Multi-OMICs Approach.

Authors:  Baiba Vilne; Heribert Schunkert
Journal:  Front Cardiovasc Med       Date:  2018-07-17

3.  Challenges of Immune Response Diversity in the Human Population Concerning New Tuberculosis Diagnostics, Therapies, and Vaccines.

Authors:  Abul K Azad; Christopher Lloyd; Wolfgang Sadee; Larry S Schlesinger
Journal:  Front Cell Infect Microbiol       Date:  2020-04-08       Impact factor: 5.293

4.  An in silico approach to identify and prioritize miRNAs target sites polymorphisms in colorectal cancer and obesity.

Authors:  Morteza Gholami; Marzieh Zoughi; Bagher Larijani; Mahsa M Amoli; Milad Bastami
Journal:  Cancer Med       Date:  2020-10-18       Impact factor: 4.452

5.  Identifying Putative Causal Links between MicroRNAs and Severe COVID-19 Using Mendelian Randomization.

Authors:  Chang Li; Aurora Wu; Kevin Song; Jeslyn Gao; Eric Huang; Yongsheng Bai; Xiaoming Liu
Journal:  Cells       Date:  2021-12-11       Impact factor: 7.666

  5 in total

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