| Literature DB >> 27590272 |
Chen-Yue Qian1,2,3, Yi Zheng4, Ying Wang5, Juan Chen1,2,3, Jun-Yan Liu6, Hong-Hao Zhou1,2,3, Ji-Ye Yin1,2,3, Zhao-Qian Liu7,8,9.
Abstract
BACKGROUND: Platinum-based chemotherapy is the first-line treatment of non-small cell lung cancer (NSCLC); it is therefore important to discover biomarkers that can be used to predict the efficacy and toxicity of this treatment. Four important transporter genes are expressed in the kidney, including organic cation transporter 2 (OCT2), multidrug and toxin extrusion 1 (MATE1), ATP-binding cassette subfamily B member 1 (ABCB1), and ATP-binding cassette subfamily C member 2 (ABCC2), and genetic polymorphisms in these genes may alter the efficacy and adverse effects of platinum drugs. This study aimed to evaluate the association of genetic polymorphisms of these transporters with platinum-based chemotherapy response and toxicity in NSCLC patients.Entities:
Keywords: ABCC2; MATE1; Non-small cell lung cancer; OCT2; Platinum-based chemotherapy
Mesh:
Substances:
Year: 2016 PMID: 27590272 PMCID: PMC5010769 DOI: 10.1186/s40880-016-0145-8
Source DB: PubMed Journal: Chin J Cancer ISSN: 1944-446X
The characteristics of all single-nucleotide polymorphisms (SNPs) involved in the study
| Gene | Location | SNP | Alleles | MAF | Call rate (%) | HWE |
|---|---|---|---|---|---|---|
|
| 6q25.3 | rs316003 | C/T | 0.78 (T) | 96.28 | 0.903 |
| rs316019 | G/T | 0.85 (G) | 96.28 | 0.949 | ||
|
| 7q21.12 | rs1045642 | C/T | 0.38 (T) | 98.26 | 0.969 |
|
| 10q24 | rs717620 | G/A | 0.19 (A) | 95.53 | 0.766 |
| rs2273697 | G/A | 0.10 (A) | 99.75 | 0.357 | ||
| rs3740066 | G/A | 0.20 (A) | 96.77 | 0.873 | ||
|
| 17p11.2 | rs2289669 | G/A | 0.50 (A) | 96.03 | 0.128 |
MAF minor allele frequency, HWE Hardy–Weinberg equilibrium, OCT2 organic cation transporter 2, ABCB1 ATP-binding cassette subfamily B member 1, ABCC2 ATP-binding cassette subfamily C member 2, MATE1 multidrug and toxin extrusion 1
The clinical characteristics of the 403 non-small cell lung cancer (NSCLC) patients
| Variate | Total | Overall toxicity | Hematological toxicity | Hepatotoxicity | Gastrointestinal toxicity | Responsea | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Grade 0–2 | Grade 3–4 | Grade 0–2 | Grade 3–4 | Grade 0–2 | Grade 3–4 | Grade 0–2 | Grade 3–4 | CR + PR | SD + PD | ||
| All | 403 | 268 (66.5) | 135 (33.5) | 308 (76.4) | 95 (23.6) | 348 (86.4) | 55 (13.6) | 368 (91.3) | 35 (8.7) | 115 (29.1) | 280 (70.9) |
| Age (years) | |||||||||||
| ≤55 | 176 (43.7) | 114 (42.5) | 62 (45.9) | 139 (45.1) | 37 (38.9) | 144 (41.4) | 32 (58.2) | 156 (42.4) | 20 (57.1) | 54 (47.0) | 118 (42.1) |
| >55 | 227 (56.3) | 154 (57.5) | 73 (54.1) | 169 (54.9) | 58 (61.1) | 204 (58.6) | 23 (41.8) | 212 (57.6) | 15 (42.9) | 61 (53.0) | 162 (57.9) |
| Smoking status | |||||||||||
| Never | 170 (42.2) | 107 (39.9) | 63 (46.7) | 131 (42.5) | 39 (41.1) | 142 (40.8) | 28 (50.9) | 154 (41.8) | 16 (45.7) | 46 (40.0) | 119 (42.5) |
| Ever | 233 (57.8) | 161 (60.1) | 72 (53.3) | 177 (57.5) | 56 (58.9) | 206 (59.2) | 27 (49.1) | 214 (58.2) | 19 (54.3) | 69 (60.0) | 161 (57.5) |
| Sex | |||||||||||
| Male | 307 (76.2) | 214 (79.9) | 93 (68.9) | 240 (77.9) | 67 (70.5) | 269 (77.3) | 38 (69.1) | 286 (71.7) | 21 (60.0) | 90 (78.3) | 213 (76.1) |
| Female | 96 (23.8) | 54 (20.1) | 42 (31.1) | 68 (22.1) | 28 (29.5) | 79 (22.7) | 17 (30.9) | 82 (22.3) | 14 (40.0) | 25 (21.7) | 67 (23.9) |
| Eastern cooperative oncology group (ECOG) performance status | |||||||||||
| 0–1 | 380 (94.3) | 255 (95.2) | 125 (92.6) | 290 (94.2) | 90 (94.7) | 329 (94.5) | 51 (92.7) | 348 (94.6) | 32 (91.4) | 110 (95.7) | 263 (93.9) |
| 2 | 23 (5.7) | 13 (4.8) | 10 (7.4) | 18 (5.8) | 5 (5.3) | 19 (5.5) | 4 (7.3) | 20 (5.4) | 3 (8.6) | 5 (4.3) | 17 (6.1) |
| Histological type | |||||||||||
| Adenocarcinoma | 217 (53.8) | 144 (53.7) | 73 (54.1) | 180 (58.4) | 37 (38.9) | 186 (53.4) | 31 (56.4) | 198 (53.8) | 19 (54.3) | 68 (59.1) | 115 (41.1) |
| Squamous cell | 186 (46.2) | 124 (46.3) | 62 (45.9) | 128 (41.6) | 58 (61.1) | 162 (46.6) | 24 (43.6) | 170 (46.2) | 16 (45.7) | 47 (40.9) | 165 (58.9) |
| TNM stage | |||||||||||
| I–II | 9 (2.2) | 7 (2.6) | 2 (1.5) | 7 (2.3) | 2 (2.1) | 9 (2.6) | 0 (0.0) | 8 (2.2) | 1 (2.9) | 2 (1.7) | 7 (2.5) |
| III–IV | 394 (97.8) | 261 (97.4) | 133 (98.5) | 301 (97.7) | 93 (97.9) | 339 (97.4) | 55 (100.0) | 360 (97.8) | 34 (97.1) | 113 (98.3) | 273 (97.5) |
| Platinum-based drug | |||||||||||
| Cisplatin | 333 (82.6) | 222 (82.8) | 111 (82.2) | 255 (82.8) | 78 (82.1) | 284 (81.6) | 49 (89.1) | 302 (82.1) | 31 (88.6) | 99 (86.1) | 229 (81.8) |
| Carboplatin | 70 (17.4) | 46 (17.2) | 24 (17.8) | 53 (17.2) | 17 (17.9) | 64 (18.4) | 6 (10.9) | 66 (17.9) | 4 (11.4) | 16 (13.9) | 51 (18.2) |
| Chemotherapy regimen | |||||||||||
| Platinum-gemcitabine | 196 (48.6) | 119 (44.4) | 77 (57.0) | 131 (42.5) | 65 (68.4) | 168 (48.3) | 28 (50.9) | 179 (48.6) | 17 (48.6) | 73 (63.5) | 120 (42.8) |
| Platinum-pemetrexed | 148 (36.7) | 105 (39.2) | 43 (31.9) | 127 (41.2) | 21 (22.1) | 130 (37.4) | 18 (32.7) | 133 (36.1) | 15 (42.8) | 27 (23.5) | 117 (41.8) |
| Platinum-paclitaxel | 35 (8.7) | 27 (10.1) | 8 (5.9) | 30 (9.8) | 5 (5.3) | 30 (8.6) | 5 (9.1) | 33 (9.0) | 2 (5.7) | 9 (7.8) | 26 (9.3) |
| Platinum-docetaxel | 20 (5.0) | 14 (5.2) | 6 (4.5) | 17 (5.5) | 3 (3.2) | 16 (4.6) | 4 (7.3) | 19 (5.2) | 1 (2.9) | 4 (3.5) | 15 (5.4) |
| Platinum-navelbine | 4 (1.0) | 3 (1.1) | 1 (0.7) | 3 (1.0) | 1 (1.0) | 4 (1.1) | 0 (0.0) | 4 (1.1) | 0 (0.0) | 2 (1.7) | 2 (0.7) |
All data are presented as the number of patients with percentage in parentheses
CR complete response, PR partial response, PD progressive disease, SD stable disease
aThe assessment information of 8 patients were lost in the process of sample collection
Associations of seven SNPs with platinum-based chemotherapy toxicity in the 403 NSCLC patients
| Gene SNP | Genotype | Hepatotoxicity | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Grade 1–2 [cases (%)] | Grade 3–4 [cases (%)] | Additive model | Dominant model | Recessive model | |||||
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| ||||
| Total | 348 | 55 | |||||||
|
| |||||||||
| rs316003 | CC | 18 (5.2) | 1 (1.8) | 0.61 (0.34–1.08) | 0.089 | 0.59 (0.31–1.12) | 0.109 | 0.37 (0.05–2.83) | 0.336 |
| CT | 120 (34.5) | 14 (25.5) | |||||||
| TT | 298 (85.6) | 37 (67.3) | |||||||
| rs316019 | TT | 9 (2.6) | 0 (0.0) | 0.42 (0.20–0.90) |
| 0.42 (0.19–0.93) |
| 0.00 | 0.998 |
| GT | 87 (25.0) | 8 (14.5) | |||||||
| GG | 239 (68.7) | 45 (81.8) | |||||||
|
| |||||||||
| rs1045642 | TT | 51 (14.7) | 6 (10.9) | 0.81 (0.52–1.26) | 0.354 | 0.75 (0.42–1.35) | 0.337 | 0.81 (0.32–2.01) | 0.643 |
| CT | 165 (47.4) | 24 (43.6) | |||||||
| CC | 126 (36.2) | 24 (43.6) | |||||||
|
| |||||||||
| rs717620 | AA | 10 (2.9) | 2 (3.6) | 0.93 (0.54–1.59) | 0.782 | 0.89 (0.48–1.66) | 0.712 | 1.11 (0.23–5.44) | 0.895 |
| AG | 104 (29.9) | 15 (27.3) | |||||||
| GG | 216 (62.1) | 38 (69.1) | |||||||
| rs2273697 | AA | 2 (0.6) | 0 (0.0) | 1.15 (0.58–2.28) | 0.682 | 1.20 (0.59–2.44) | 0.608 | 0.00 | 0.999 |
| AG | 60 (17.2) | 12 (21.8) | |||||||
| GG | 285 (81.9) | 43 (78.2) | |||||||
| rs3740066 | AA | 12 (3.4) | 2 (3.6) | 0.69 (0.38–1.23) | 0.206 | 0.60 (0.31–1.17) | 0.134 | 1.04 (0.22–4.92) | 0.958 |
| AG | 113 (32.5) | 11 (20.0) | |||||||
| GG | 213 (61.2) | 39 (70.9) | |||||||
|
| |||||||||
| rs2289669 | AA | 79 (22.7) | 10 (18.2) | 0.86 (0.56–1.33) | 0.500 | 0.92 (0.46–1.82) | 0.804 | 0.73 (0.35–1.53) | 0.402 |
| AG | 175 (50.3) | 30 (54.5) | |||||||
| GG | 80 (23.0) | 13 (23.6) | |||||||
OCT2 organic cation transporter 2, ABCB1 ATP-binding cassette subfamily B member 1, ABCC2 ATP-binding cassette subfamily C member 2, MATE1 multidrug and toxin extrusion 1
Fig. 1Stratification analyses of the association of the organic cation transporter 2 (OCT2) rs316019 polymorphisms with the overall toxicity of platinum-based chemotherapy in non-small cell lung cancer (NSCLC) patients using the additive, dominant, and recessive models. Each box and horizontal line represents the values of the odds ratio (OR) and 95% confidence interval (95% CI)
Fig. 2Stratification analyses of the association of the multidrug and toxin extrusion 1 (MATE1) rs2289669 polymorphisms with the overall toxicity of platinum-based chemotherapy in NSCLC patients using the additive, dominant, and recessive models. Each box and horizontal line represents the values of the OR and 95% CI. The arrow indicates that the region of the OR was wider than the raw data set according to the computer analysis
Associations of seven SNPs with platinum-based chemotherapy response in 395 NSCLC patients
| Gene SNP | Genotype | Response | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Sensitive [cases (%)] | Resistant [cases (%)] | Additive model | Dominant model | Recessive model | |||||
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| ||||
| Total | 115 | 280 | |||||||
|
| |||||||||
| rs316003 | CC | 5 (4.3) | 13 (4.6) | 1.00 (0.68–1.47) | 0.992 | 1.01 (0.63–1.60) | 0.984 | 0.96 (0.33–2.81) | 0.939 |
| CT | 38 (33.0) | 93 (33.2) | |||||||
| TT | 65 (56.5) | 166 (59.3) | |||||||
| rs316019 | TT | 2 (1.7) | 7 (2.5) | 1.08 (0.69–1.69) | 0.741 | 1.05 (0.63–1.75) | 0.840 | 1.51 (0.30–7.51) | 0.616 |
| GT | 27 (23.5) | 68 (24.3) | |||||||
| GG | 79 (68.7) | 197 (70.4) | |||||||
|
| |||||||||
| rs1045642 | TT | 10 (8.7) | 45 (16.1) | 1.18 (0.85–1.65) | 0.323 | 1.05 (0.66–1.66) | 0.834 | 1.84 (0.89–3.83) | 0.102 |
| CT | 57 (49.6) | 129 (46.1) | |||||||
| CC | 45 (39.1) | 103 (36.8) | |||||||
|
| |||||||||
| rs717620 | AA | 3 (2.6) | 9 (3.2) | 0.64 (0.43–0.96) |
| 0.54 (0.34–0.86) |
| 1.22 (0.32–4.68) | 0.772 |
| AG | 46 (40.0) | 72 (25.7) | |||||||
| GG | 62 (53.9) | 186 (66.4) | |||||||
| rs2273697 | AA | 1 (0.9) | 1 (0.4) | 1.29 (0.73–2.28) | 0.391 | 1.35 (0.74–2.47) | 0.328 | 0.59 (0.04–9.55) | 0.709 |
| AG | 16 (13.9) | 52 (18.6) | |||||||
| GG | 97 (84.3) | 227 (81.1) | |||||||
| rs3740066 | AA | 4 (3.5) | 10 (3.6) | 0.80 (0.54–1.19) | 0.271 | 0.72 (0.45–1.14) | 0.162 | 1.18 (0.36–3.90) | 0.790 |
| AG | 42 (36.5) | 81 (28.9) | |||||||
| GG | 65 (56.5) | 181 (64.6) | |||||||
|
| |||||||||
| rs2289669 | AA | 20 (17.4) | 65 (23.2) | 1.30 (0.93–1.81) | 0.126 | 1.32 (0.79–2.21) | 0.293 | 1.51 (0.86–2.66) | 0.155 |
| AG | 58 (50.4) | 140 (50.0) | |||||||
| GG | 30 (26.1) | 62 (22.1) | |||||||
OCT2 organic cation transporter 2, ABCB1 ATP-binding cassette subfamily B member 1, ABCC2 ATP-binding cassette subfamily C member 2, MATE1 multidrug and toxin extrusion 1
Fig. 3Stratification analyses of the association of the ATP-binding cassette subfamily C member 2 (ABCC2) rs717620 polymorphisms and the efficacy of platinum-based chemotherapy in NSCLC patients using the additive, dominant, and recessive models. Each box and horizontal line represents the values of OR and 95% CI. The arrow indicates that the region of the OR was wider than the raw data set according to the computer analysis