Literature DB >> 27586339

Conformational Restriction of Peptides Using Dithiol Bis-Alkylation.

L Peraro1, T R Siegert1, J A Kritzer2.   

Abstract

Macrocyclic peptides are highly promising as inhibitors of protein-protein interactions. While many bond-forming reactions can be used to make cyclic peptides, most have limitations that make this chemical space challenging to access. Recently, a variety of cysteine alkylation reactions have been used in rational design and library approaches for cyclic peptide discovery and development. We and others have found that this chemistry is versatile and robust enough to produce a large variety of conformationally constrained cyclic peptides. In this chapter, we describe applications, methods, mechanistic insights, and troubleshooting for dithiol bis-alkylation reactions for the production of cyclic peptides. This method for efficient solution-phase macrocyclization is highly useful for the rapid production and screening of loop-based inhibitors of protein-protein interactions.
© 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cyclic peptides; Loops; Peptide design; Peptide synthesis; Protein–protein interactions

Mesh:

Substances:

Year:  2016        PMID: 27586339      PMCID: PMC5591025          DOI: 10.1016/bs.mie.2016.05.035

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  66 in total

Review 1.  Fine-tuning multiprotein complexes using small molecules.

Authors:  Andrea D Thompson; Amanda Dugan; Jason E Gestwicki; Anna K Mapp
Journal:  ACS Chem Biol       Date:  2012-07-23       Impact factor: 5.100

2.  Structure of the Eps15-stonin2 complex provides a molecular explanation for EH-domain ligand specificity.

Authors:  Julia Rumpf; Bernd Simon; Nadja Jung; Tanja Maritzen; Volker Haucke; Michael Sattler; Yvonne Groemping
Journal:  EMBO J       Date:  2008-01-17       Impact factor: 11.598

Review 3.  Peptidomimetics via modifications of amino acids and peptide bonds.

Authors:  Ilker Avan; C Dennis Hall; Alan R Katritzky
Journal:  Chem Soc Rev       Date:  2014-03-13       Impact factor: 54.564

Review 4.  Constraining cyclic peptides to mimic protein structure motifs.

Authors:  Timothy A Hill; Nicholas E Shepherd; Frederik Diness; David P Fairlie
Journal:  Angew Chem Int Ed Engl       Date:  2014-10-06       Impact factor: 15.336

5.  Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions?

Authors:  Nir London; Barak Raveh; Dana Movshovitz-Attias; Ora Schueler-Furman
Journal:  Proteins       Date:  2010-11-15

6.  Identification of a candidate therapeutic autophagy-inducing peptide.

Authors:  Sanae Shoji-Kawata; Rhea Sumpter; Matthew Leveno; Grant R Campbell; Zhongju Zou; Lisa Kinch; Angela D Wilkins; Qihua Sun; Kathrin Pallauf; Donna MacDuff; Carlos Huerta; Herbert W Virgin; J Bernd Helms; Ruud Eerland; Sharon A Tooze; Ramnik Xavier; Deborah J Lenschow; Ai Yamamoto; David King; Olivier Lichtarge; Nick V Grishin; Stephen A Spector; Dora V Kaloyanova; Beth Levine
Journal:  Nature       Date:  2013-01-30       Impact factor: 49.962

7.  Efficient delivery of cyclic peptides into mammalian cells with short sequence motifs.

Authors:  Ziqing Qian; Tao Liu; Yu-Yu Liu; Roger Briesewitz; Amy M Barrios; Sissy M Jhiang; Dehua Pei
Journal:  ACS Chem Biol       Date:  2012-11-12       Impact factor: 5.100

Review 8.  Constrained peptides as miniature protein structures.

Authors:  Hang Yin
Journal:  ISRN Biochem       Date:  2012-09-26

9.  Structured cyclic peptides that bind the EH domain of EHD1.

Authors:  Alissa J Kamens; Robyn J Eisert; Tiffany Corlin; James D Baleja; Joshua A Kritzer
Journal:  Biochemistry       Date:  2014-07-17       Impact factor: 3.162

10.  Anatomy of β-strands at protein-protein interfaces.

Authors:  Andrew M Watkins; Paramjit S Arora
Journal:  ACS Chem Biol       Date:  2014-06-09       Impact factor: 5.100

View more
  10 in total

1.  Thioether-stapled macrocyclic inhibitors of the EH domain of EHD1.

Authors:  Alissa J Kamens; Kaley M Mientkiewicz; Robyn J Eisert; Jenna A Walz; Charles R Mace; Joshua A Kritzer
Journal:  Bioorg Med Chem       Date:  2017-09-18       Impact factor: 3.641

2.  Stapled Peptide Inhibitors of Autophagy Adapter LC3B.

Authors:  Robert A Cerulli; Livia Shehaj; Hawley Brown; Jennifer Pace; Yang Mei; Joshua A Kritzer
Journal:  Chembiochem       Date:  2020-06-22       Impact factor: 3.164

3.  Cell Penetration Profiling Using the Chloroalkane Penetration Assay.

Authors:  Leila Peraro; Kirsten L Deprey; Matthew K Moser; Zhongju Zou; Haydn L Ball; Beth Levine; Joshua A Kritzer
Journal:  J Am Chem Soc       Date:  2018-08-31       Impact factor: 15.419

4.  Structure-Based Design of Stapled Peptides That Bind GABARAP and Inhibit Autophagy.

Authors:  Hawley Brown; Mia Chung; Alina Üffing; Nefeli Batistatou; Tiffany Tsang; Samantha Doskocil; Weiqun Mao; Dieter Willbold; Robert C Bast; Zhen Lu; Oliver H Weiergräber; Joshua A Kritzer
Journal:  J Am Chem Soc       Date:  2022-08-02       Impact factor: 16.383

5.  Stapled β-Hairpins Featuring 4-Mercaptoproline.

Authors:  Jennifer R Pace; Bryan J Lampkin; Charles Abakah; Adam Moyer; Jiayuan Miao; Kirsten Deprey; Robert A Cerulli; Yu-Shan Lin; James D Baleja; David Baker; Joshua A Kritzer
Journal:  J Am Chem Soc       Date:  2021-09-13       Impact factor: 16.383

6.  Stapling of two PEGylated side chains increases the conformational stability of the WW domain via an entropic effect.

Authors:  Qiang Xiao; Natalie A Bécar; Nathaniel P Brown; Mason S Smith; Kimberlee L Stern; Steven R E Draper; Katherine P Thompson; Joshua L Price
Journal:  Org Biomol Chem       Date:  2018-11-28       Impact factor: 3.876

7.  Directed Evolution Using Stabilized Bacterial Peptide Display.

Authors:  Tejas Navaratna; Lydia Atangcho; Mukesh Mahajan; Vivekanandan Subramanian; Marshall Case; Andrew Min; Daniel Tresnak; Greg M Thurber
Journal:  J Am Chem Soc       Date:  2020-01-10       Impact factor: 15.419

8.  Diversity-Oriented Stapling Yields Intrinsically Cell-Penetrant Inducers of Autophagy.

Authors:  Leila Peraro; Zhongju Zou; Kamlesh M Makwana; Ashleigh E Cummings; Haydn L Ball; Hongtao Yu; Yu-Shan Lin; Beth Levine; Joshua A Kritzer
Journal:  J Am Chem Soc       Date:  2017-05-09       Impact factor: 15.419

9.  Rational design of new cyclic analogues of the antimicrobial lipopeptide tridecaptin A1.

Authors:  Ross D Ballantine; Yong-Xin Li; Pei-Yuan Qian; Stephen A Cochrane
Journal:  Chem Commun (Camb)       Date:  2018-09-04       Impact factor: 6.222

10.  Structural guidelines for stabilization of α-helical coiled coils via PEG stapling.

Authors:  Qiang Xiao; Zachary B Jones; Samantha C Hatfield; Dallin S Ashton; Nicholas A Dalley; Cody D Dyer; Judah L Evangelista; Joshua L Price
Journal:  RSC Chem Biol       Date:  2022-07-26
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.