Literature DB >> 27585572

Molecular markers: a potential resource for ginger genetic diversity studies.

Nor Asiah Ismail1,2, M Y Rafii3,4, T M M Mahmud1,5, M M Hanafi5,6, Gous Miah5.   

Abstract

Ginger is an economically important and valuable plant around the world. Ginger is used as a food, spice, condiment, medicine and ornament. There is available information on biochemical aspects of ginger, but few studies have been reported on its molecular aspects. The main objective of this review is to accumulate the available molecular marker information and its application in diverse ginger studies. This review article was prepared by combing material from published articles and our own research. Molecular markers allow the identification and characterization of plant genotypes through direct access to hereditary material. In crop species, molecular markers are applied in different aspects and are useful in breeding programs. In ginger, molecular markers are commonly used to identify genetic variation and classify the relatedness among varieties, accessions, and species. Consequently, it provides important input in determining resourceful management strategies for ginger improvement programs. Alternatively, a molecular marker could function as a harmonizing tool for documenting species. This review highlights the application of molecular markers (isozyme, RAPD, AFLP, SSR, ISSR and others such as RFLP, SCAR, NBS and SNP) in genetic diversity studies of ginger species. Some insights on the advantages of the markers are discussed. The detection of genetic variation among promising cultivars of ginger has significance for ginger improvement programs. This update of recent literature will help researchers and students select the appropriate molecular markers for ginger-related research.

Entities:  

Keywords:  Advantages and disadvantages; Genetic diversity; Ginger; Molecular markers

Mesh:

Substances:

Year:  2016        PMID: 27585572     DOI: 10.1007/s11033-016-4070-3

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  30 in total

1.  Assessment of cytochrome P450 sequences offers a useful tool for determining genetic diversity in higher plant species.

Authors:  S Yamanaka; E Suzuki; M Tanaka; Y Takeda; J A Watanabe; K N Watanabe
Journal:  Theor Appl Genet       Date:  2003-09-13       Impact factor: 5.699

Review 2.  Advances in molecular marker techniques and their applications in plant sciences.

Authors:  Milee Agarwal; Neeta Shrivastava; Harish Padh
Journal:  Plant Cell Rep       Date:  2008-02-02       Impact factor: 4.570

3.  DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.

Authors:  J G Williams; A R Kubelik; K J Livak; J A Rafalski; S V Tingey
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

Review 4.  Molecular markers in medicinal plant biotechnology: past and present.

Authors:  Maryam Sarwat; Gowher Nabi; Sandip Das; Prem Shankar Srivastava
Journal:  Crit Rev Biotechnol       Date:  2011-06-08       Impact factor: 8.429

5.  Genetic relationships among five varieties of Curcuma alismatifolia (Zingiberaceae) based on ISSR markers.

Authors:  S Taheri; T L Abdullah; N A P Abdullah; Z Ahmad
Journal:  Genet Mol Res       Date:  2012-08-31

6.  Species-specific AFLP markers for identification of Zingiber officinale, Z. montanum and Z. zerumbet (Zingiberaceae).

Authors:  S Ghosh; P B Majumder; S Sen Mandi
Journal:  Genet Mol Res       Date:  2011-02-08

7.  Generation and characterization of SCARs by cloning and sequencing of RAPD products: a strategy for species-specific marker development in bamboo.

Authors:  Malay DAS; Samik Bhattacharya; Amita Pal
Journal:  Ann Bot       Date:  2005-02-24       Impact factor: 4.357

8.  Identification of single nucleotide polymorphism in ginger using expressed sequence tags.

Authors:  Arumugam Chandrasekar; Aikkal Riju; Kandiyl Sithara; Sahadevan Anoop; Santhosh J Eapen
Journal:  Bioinformation       Date:  2009-09-30

9.  Determination of Phylogenetic and Molecular Characteristics of Three Malaysian Ginger Cultivars (Zingiber officinale Roscoe) Using Microsatellite DNA.

Authors:  Harith Jameel Mahdi; Retno Andayani; Ishak Aziz
Journal:  Trop Life Sci Res       Date:  2013-12

10.  Development, characterization and cross species amplification of polymorphic microsatellite markers from expressed sequence tags of turmeric (Curcuma longa L.).

Authors:  S Siju; K Dhanya; S Syamkumar; B Sasikumar; T E Sheeja; A I Bhat; V A Parthasarathy
Journal:  Mol Biotechnol       Date:  2010-02       Impact factor: 2.695

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  7 in total

1.  The newly developed single nucleotide polymorphism (SNP) markers for a potentially medicinal plant, Crepidiastrum denticulatum (Asteraceae), inferred from complete chloroplast genome data.

Authors:  Hoang Dang Khoa Do; Joonhyung Jung; JongYoung Hyun; Seok Jeong Yoon; Chaejin Lim; Keedon Park; Joo-Hwan Kim
Journal:  Mol Biol Rep       Date:  2019-04-12       Impact factor: 2.316

2.  Cis-element amplified polymorphism (CEAP), a novel promoter- and gene-targeted molecular marker of plants.

Authors:  Meiyan Chen; Xinhua He; Xing Huang; Tingting Lu; Yili Zhang; Jiawei Zhu; Haixia Yu; Cong Luo
Journal:  Physiol Mol Biol Plants       Date:  2022-08-02

3.  Two Cycloartenol Synthases for Phytosterol Biosynthesis in Polygala tenuifolia Willd.

Authors:  Mei Lan Jin; Woo Moon Lee; Ok Tae Kim
Journal:  Int J Mol Sci       Date:  2017-11-15       Impact factor: 5.923

4.  Genetic Diversity of Torch Ginger (Etlingera elatior) Germplasm Revealed by ISSR and SSR Markers.

Authors:  Nor Asiah Ismail; M Y Rafii; T M M Mahmud; M M Hanafi; Gous Miah
Journal:  Biomed Res Int       Date:  2019-05-06       Impact factor: 3.411

5.  Analyses of the genetic diversity and population structures of Histoplasma capsulatum clinical isolates from Mexico, Guatemala, Colombia and Argentina, using a randomly amplified polymorphic DNA-PCR assay.

Authors:  J H Sahaza; E Duarte-Escalante; C Canteros; G Rodríguez-Arellanes; M R Reyes-Montes; M L Taylor
Journal:  Epidemiol Infect       Date:  2019-01       Impact factor: 2.451

6.  De novo Transcriptomic Resources in the Brain of Vespa velutina for Invasion Control.

Authors:  Miao Wang; Hanyu Li; Huoqing Zheng; Liuwei Zhao; Xiaofeng Xue; Liming Wu
Journal:  Insects       Date:  2020-02-03       Impact factor: 2.769

7.  De novo transcriptome assembly, gene annotation, and EST-SSR marker development of an important medicinal and edible crop, Amomum tsaoko (Zingiberaceae).

Authors:  Mengli Ma; Hengling Meng; En Lei; Tiantao Wang; Wei Zhang; Bingyue Lu
Journal:  BMC Plant Biol       Date:  2022-09-29       Impact factor: 5.260

  7 in total

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