Literature DB >> 27582569

Clinical impact of recurrently mutated genes on lymphoma diagnostics: state-of-the-art and beyond.

Richard Rosenquist1, Andreas Rosenwald2, Ming-Qing Du3, Gianluca Gaidano4, Patricia Groenen5, Andrew Wotherspoon6, Paolo Ghia7, Philippe Gaulard8, Elias Campo9, Kostas Stamatopoulos10.   

Abstract

Similar to the inherent clinical heterogeneity of most, if not all, lymphoma entities, the genetic landscape of these tumors is markedly complex in the majority of cases, with a rapidly growing list of recurrently mutated genes discovered in recent years by next-generation sequencing technology. Whilst a few genes have been implied to have diagnostic, prognostic and even predictive impact, most gene mutations still require rigorous validation in larger, preferably prospective patient series, to scrutinize their potential role in lymphoma diagnostics and patient management. In selected entities, a predominantly mutated gene is identified in almost all cases (e.g. Waldenström's macroglobulinemia/lymphoplasmacytic lymphoma and hairy-cell leukemia), while for the vast majority of lymphomas a quite diverse mutation pattern is observed, with a limited number of frequently mutated genes followed by a seemingly endless tail of genes with mutations at a low frequency. Herein, the European Expert Group on NGS-based Diagnostics in Lymphomas (EGNL) summarizes the current status of this ever-evolving field, and, based on the present evidence level, segregates mutations into the following categories: i) immediate impact on treatment decisions, ii) diagnostic impact, iii) prognostic impact, iv) potential clinical impact in the near future, or v) should only be considered for research purposes. In the coming years, coordinated efforts aiming to apply targeted next-generation sequencing in large patient series will be needed in order to elucidate if a particular gene mutation will have an immediate impact on the lymphoma classification, and ultimately aid clinical decision making. Copyright© Ferrata Storti Foundation.

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Year:  2016        PMID: 27582569      PMCID: PMC5060016          DOI: 10.3324/haematol.2015.134510

Source DB:  PubMed          Journal:  Haematologica        ISSN: 0390-6078            Impact factor:   9.941


  106 in total

1.  Oncogenically active MYD88 mutations in human lymphoma.

Authors:  Vu N Ngo; Ryan M Young; Roland Schmitz; Sameer Jhavar; Wenming Xiao; Kian-Huat Lim; Holger Kohlhammer; Weihong Xu; Yandan Yang; Hong Zhao; Arthur L Shaffer; Paul Romesser; George Wright; John Powell; Andreas Rosenwald; Hans Konrad Muller-Hermelink; German Ott; Randy D Gascoyne; Joseph M Connors; Lisa M Rimsza; Elias Campo; Elaine S Jaffe; Jan Delabie; Erlend B Smeland; Richard I Fisher; Rita M Braziel; Raymond R Tubbs; J R Cook; Denny D Weisenburger; Wing C Chan; Louis M Staudt
Journal:  Nature       Date:  2010-12-22       Impact factor: 49.962

2.  High prevalence of oncogenic MYD88 and CD79B mutations in primary testicular diffuse large B-cell lymphoma.

Authors:  W Kraan; M van Keimpema; H M Horlings; E J M Schilder-Tol; M E C M Oud; L A Noorduyn; P M Kluin; M J Kersten; M Spaargaren; S T Pals
Journal:  Leukemia       Date:  2013-11-20       Impact factor: 11.528

Review 3.  The complex interplay between cell-intrinsic and cell-extrinsic factors driving the evolution of chronic lymphocytic leukemia.

Authors:  Lesley-Ann Sutton; Richard Rosenquist
Journal:  Semin Cancer Biol       Date:  2015-05-09       Impact factor: 15.707

4.  TP53 mutations are frequent events in double-hit B-cell lymphomas with MYC and BCL2 but not MYC and BCL6 translocations.

Authors:  Niklas Gebauer; Veronica Bernard; Wolfgang Gebauer; Christoph Thorns; Alfred C Feller; Hartmut Merz
Journal:  Leuk Lymphoma       Date:  2014-05-07

5.  KLF2 mutation is the most frequent somatic change in splenic marginal zone lymphoma and identifies a subset with distinct genotype.

Authors:  A Clipson; M Wang; L de Leval; M Ashton-Key; A Wotherspoon; G Vassiliou; N Bolli; C Grove; S Moody; L Escudero-Ibarz; G Gundem; K Brugger; X Xue; E Mi; A Bench; M Scott; H Liu; G Follows; E F Robles; J A Martinez-Climent; D Oscier; A J Watkins; M-Q Du
Journal:  Leukemia       Date:  2014-11-27       Impact factor: 11.528

6.  Targeting B cell receptor signaling with ibrutinib in diffuse large B cell lymphoma.

Authors:  Wyndham H Wilson; Ryan M Young; Roland Schmitz; Yandan Yang; Stefania Pittaluga; George Wright; Chih-Jian Lih; P Mickey Williams; Arthur L Shaffer; John Gerecitano; Sven de Vos; Andre Goy; Vaishalee P Kenkre; Paul M Barr; Kristie A Blum; Andrei Shustov; Ranjana Advani; Nathan H Fowler; Julie M Vose; Rebecca L Elstrom; Thomas M Habermann; Jacqueline C Barrientos; Jesse McGreivy; Maria Fardis; Betty Y Chang; Fong Clow; Brian Munneke; Davina Moussa; Darrin M Beaupre; Louis M Staudt
Journal:  Nat Med       Date:  2015-07-20       Impact factor: 53.440

7.  Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics.

Authors:  Roland Schmitz; Ryan M Young; Michele Ceribelli; Sameer Jhavar; Wenming Xiao; Meili Zhang; George Wright; Arthur L Shaffer; Daniel J Hodson; Eric Buras; Xuelu Liu; John Powell; Yandan Yang; Weihong Xu; Hong Zhao; Holger Kohlhammer; Andreas Rosenwald; Philip Kluin; Hans Konrad Müller-Hermelink; German Ott; Randy D Gascoyne; Joseph M Connors; Lisa M Rimsza; Elias Campo; Elaine S Jaffe; Jan Delabie; Erlend B Smeland; Martin D Ogwang; Steven J Reynolds; Richard I Fisher; Rita M Braziel; Raymond R Tubbs; James R Cook; Dennis D Weisenburger; Wing C Chan; Stefania Pittaluga; Wyndham Wilson; Thomas A Waldmann; Martin Rowe; Sam M Mbulaiteye; Alan B Rickinson; Louis M Staudt
Journal:  Nature       Date:  2012-08-12       Impact factor: 49.962

8.  EZH2 is required for germinal center formation and somatic EZH2 mutations promote lymphoid transformation.

Authors:  Wendy Béguelin; Relja Popovic; Matt Teater; Yanwen Jiang; Karen L Bunting; Monica Rosen; Hao Shen; Shao Ning Yang; Ling Wang; Teresa Ezponda; Eva Martinez-Garcia; Haikuo Zhang; Yupeng Zheng; Sharad K Verma; Michael T McCabe; Heidi M Ott; Glenn S Van Aller; Ryan G Kruger; Yan Liu; Charles F McHugh; David W Scott; Young Rock Chung; Neil Kelleher; Rita Shaknovich; Caretha L Creasy; Randy D Gascoyne; Kwok-Kin Wong; Leandro Cerchietti; Ross L Levine; Omar Abdel-Wahab; Jonathan D Licht; Olivier Elemento; Ari M Melnick
Journal:  Cancer Cell       Date:  2013-05-13       Impact factor: 31.743

9.  Genomic profiling of Sézary syndrome identifies alterations of key T cell signaling and differentiation genes.

Authors:  Linghua Wang; Xiao Ni; Kyle R Covington; Betty Y Yang; Jessica Shiu; Xiang Zhang; Liu Xi; Qingchang Meng; Timothy Langridge; Jennifer Drummond; Lawrence A Donehower; Harshavardhan Doddapaneni; Donna M Muzny; Richard A Gibbs; David A Wheeler; Madeleine Duvic
Journal:  Nat Genet       Date:  2015-11-09       Impact factor: 38.330

10.  Detailed analysis of therapy-driven clonal evolution of TP53 mutations in chronic lymphocytic leukemia.

Authors:  J Malcikova; K Stano-Kozubik; B Tichy; B Kantorova; S Pavlova; N Tom; L Radova; J Smardova; F Pardy; M Doubek; Y Brychtova; M Mraz; K Plevova; E Diviskova; A Oltova; J Mayer; S Pospisilova; M Trbusek
Journal:  Leukemia       Date:  2014-10-28       Impact factor: 11.528

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  11 in total

1.  Myeloproliferative and lymphoproliferative malignancies occurring in the same patient: a nationwide discovery cohort.

Authors:  Johanne M Holst; Trine L Plesner; Martin B Pedersen; Henrik Frederiksen; Michael B Møller; Michael R Clausen; Marcus C Hansen; Stephen Jacques Hamilton-Dutoit; Peter Nørgaard; Preben Johansen; Tobias Ramm Eberlein; Bo K Mortensen; Gustav Mathiasen; Andreas Øvlisen; Rui Wang; Chao Wang; Weiwei Zhang; Hans Beier Ommen; Jesper Stentoft; Maja Ludvigsen; Wayne Tam; Wing C Chan; Giorgio Inghirami; Francesco d'Amore
Journal:  Haematologica       Date:  2019-11-28       Impact factor: 9.941

2.  Histone modifier gene mutations in peripheral T-cell lymphoma not otherwise specified.

Authors:  Meng-Meng Ji; Yao-Hui Huang; Jin-Yan Huang; Zhao-Fu Wang; Di Fu; Han Liu; Feng Liu; Christophe Leboeuf; Li Wang; Jing Ye; Yi-Ming Lu; Anne Janin; Shu Cheng; Wei-Li Zhao
Journal:  Haematologica       Date:  2018-01-05       Impact factor: 9.941

3.  Predicting AID off-targets: A step forward.

Authors:  Claude-Agnès Reynaud; Jean-Claude Weill
Journal:  J Exp Med       Date:  2018-02-15       Impact factor: 14.307

Review 4.  What Does This Mutation Mean? The Tools and Pitfalls of Variant Interpretation in Lymphoid Malignancies.

Authors:  Yann Guillermin; Jonathan Lopez; Kaddour Chabane; Sandrine Hayette; Claire Bardel; Gilles Salles; Pierre Sujobert; Sarah Huet
Journal:  Int J Mol Sci       Date:  2018-04-20       Impact factor: 5.923

Review 5.  From Mice to Men: How B Cell Immunology Helped the Understanding of Leukemia Development.

Authors:  Paolo Ghia
Journal:  Front Immunol       Date:  2018-10-24       Impact factor: 7.561

6.  The Need for a Consensus Next-generation Sequencing Panel for Mature Lymphoid Malignancies.

Authors:  Pierre Sujobert; Yannick Le Bris; Laurence de Leval; Audrey Gros; Jean Philippe Merlio; Cedric Pastoret; Sarah Huet; Clémentine Sarkozy; Frédéric Davi; Mary Callanan; Catherine Thieblemont; David Sibon; Vahid Asnafi; Claude Preudhomme; Philippe Gaulard; Fabrice Jardin; Gilles Salles; Elizabeth Macintyre
Journal:  Hemasphere       Date:  2018-12-27

7.  Lymphoplasmacytic lymphoma associated with diffuse large B-cell lymphoma: Progression or divergent evolution?

Authors:  Macarena Boiza-Sánchez; Rebeca Manso; Olga Balagué; Cristina Chamizo; Elham Askari; Rocío Nieves Salgado; Carlos Blas-López; Elena Aguirregoicoa-García; Javier Menárguez; Carlos Santonja; Magdalena Adrados; Miguel Ángel Limeres-González; Miguel Ángel Piris; Socorro María Rodríguez-Pinilla
Journal:  PLoS One       Date:  2020-11-12       Impact factor: 3.240

Review 8.  AID in Chronic Lymphocytic Leukemia: Induction and Action During Disease Progression.

Authors:  Pablo Oppezzo; Marcelo Navarrete; Nicholas Chiorazzi
Journal:  Front Oncol       Date:  2021-05-10       Impact factor: 6.244

9.  Normal serum protein electrophoresis and mutated IGHV genes detect very slowly evolving chronic lymphocytic leukemia patients.

Authors:  Jasmine Chauzeix; Marie-Pierre Laforêt; Mélanie Deveza; Liam Crowther; Elodie Marcellaud; Paco Derouault; Anne-Sophie Lia; François Boyer; Nicolas Bargues; Guillaume Olombel; Arnaud Jaccard; Jean Feuillard; Nathalie Gachard; David Rizzo
Journal:  Cancer Med       Date:  2018-05-09       Impact factor: 4.452

10.  Genomic landscape and mutational impacts of recurrently mutated genes in cancers.

Authors:  Baolin Liu; Fei-Fei Hu; Qiong Zhang; Hui Hu; Zheng Ye; Qin Tang; An-Yuan Guo
Journal:  Mol Genet Genomic Med       Date:  2018-08-14       Impact factor: 2.183

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