Literature DB >> 27581541

Impact of Rhg1 copy number, type, and interaction with Rhg4 on resistance to Heterodera glycines in soybean.

Neil Yu1, Tong Geon Lee1,2, Daniele P Rosa3, Matthew Hudson1, Brian W Diers4.   

Abstract

KEY MESSAGE: Evaluations of soybean populations showed that both Rhg1 copy number and type were important in determining soybean cyst nematode resistance with higher copy number within Rhg1 type conferring greater resistance. Rhg1 and Rhg4 are important loci conferring resistance to soybean cyst nematode (SCN; Heterodera glycines). Alleles at Rhg1 have been shown to vary for copy number and type and the importance of this variation in conferring resistance is not well defined. The repeat number ranges from one to 10 and there are three variant repeat sequence types [plant introduction (PI) 88788-'Fayette' type (F), 'Peking' type (P) and Williams 82 type (W)] across diverse soybean germplasm. We developed populations segregating for Rhg1 copy number and type and Rhg4 allele type to investigate the effect of these factors and their interaction on SCN resistance. F2 plants from each cross were evaluated for the segregation of Rhg1 and Rhg4 alleles and for SCN reproduction after infesting plants with HG type 2.5.7 and HG type 7 populations. Within repeat types, an increase in repeat number was associated with greater resistance. The P type Rhg1 showed an advantage over F + W type for SCN population HG type 2.5.7 but this was not observed for SCN HG type 7. While plants with P type Rhg1 required Rhg4 to achieve full resistance, Rhg4 did not increase resistance in the background of F + W type Rhg1 repeat. This study demonstrates the importance of both Rhg1 copy number and type in determining resistance and can assist soybean breeders in determining what alleles would best fit their breeding goals.

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Year:  2016        PMID: 27581541     DOI: 10.1007/s00122-016-2779-y

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  16 in total

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Authors:  Shiming Liu; Pramod K Kandoth; Samantha D Warren; Greg Yeckel; Robert Heinz; John Alden; Chunling Yang; Aziz Jamai; Tarik El-Mellouki; Parijat S Juvale; John Hill; Thomas J Baum; Silvia Cianzio; Steven A Whitham; Dmitry Korkin; Melissa G Mitchum; Khalid Meksem
Journal:  Nature       Date:  2012-10-15       Impact factor: 49.962

2.  Rhg1 alleles from soybean PI 437654 and PI 88788 respond differentially to isolates of Heterodera glycines in the greenhouse.

Authors:  Eric Brucker; Shawn Carlson; Evan Wright; Terry Niblack; Brian Diers
Journal:  Theor Appl Genet       Date:  2005-05-10       Impact factor: 5.699

3.  Identification of QTLs associated with resistance to soybean cyst nematode races 2, 3 and 5 in soybean PI 90763.

Authors:  B Guo; D A Sleper; P R Arelli; J G Shannon; H T Nguyen
Journal:  Theor Appl Genet       Date:  2005-10-18       Impact factor: 5.699

4.  Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm.

Authors:  Ki-Seung Kim; Jair R Unfried; David L Hyten; Reid D Frederick; Glen L Hartman; Randall L Nelson; Qijian Song; Brian W Diers
Journal:  Theor Appl Genet       Date:  2012-07-27       Impact factor: 5.699

5.  Genome sequence of the palaeopolyploid soybean.

Authors:  Jeremy Schmutz; Steven B Cannon; Jessica Schlueter; Jianxin Ma; Therese Mitros; William Nelson; David L Hyten; Qijian Song; Jay J Thelen; Jianlin Cheng; Dong Xu; Uffe Hellsten; Gregory D May; Yeisoo Yu; Tetsuya Sakurai; Taishi Umezawa; Madan K Bhattacharyya; Devinder Sandhu; Babu Valliyodan; Erika Lindquist; Myron Peto; David Grant; Shengqiang Shu; David Goodstein; Kerrie Barry; Montona Futrell-Griggs; Brian Abernathy; Jianchang Du; Zhixi Tian; Liucun Zhu; Navdeep Gill; Trupti Joshi; Marc Libault; Anand Sethuraman; Xue-Cheng Zhang; Kazuo Shinozaki; Henry T Nguyen; Rod A Wing; Perry Cregan; James Specht; Jane Grimwood; Dan Rokhsar; Gary Stacey; Randy C Shoemaker; Scott A Jackson
Journal:  Nature       Date:  2010-01-14       Impact factor: 49.962

6.  Distinct Copy Number, Coding Sequence, and Locus Methylation Patterns Underlie Rhg1-Mediated Soybean Resistance to Soybean Cyst Nematode.

Authors:  David E Cook; Adam M Bayless; Kai Wang; Xiaoli Guo; Qijian Song; Jiming Jiang; Andrew F Bent
Journal:  Plant Physiol       Date:  2014-04-14       Impact factor: 8.340

7.  Genetic mapping of soybean cyst nematode race-3 resistance loci in the soybean PI 437.654.

Authors:  D M Webb; B M Baltazar; A P Rao-Arelli; J Schupp; K Clayton; P Keim; W D Beavis
Journal:  Theor Appl Genet       Date:  1995-09       Impact factor: 5.699

8.  QTL underlying resistance to two HG types of Heterodera glycines found in soybean cultivar 'L-10'.

Authors:  Wei Chang; Limin Dong; Zizhen Wang; Haibo Hu; Yingpeng Han; Weili Teng; Hongxia Zhang; Maozu Guo; Wenbin Li
Journal:  BMC Genomics       Date:  2011-05-12       Impact factor: 3.969

9.  Evolution and selection of Rhg1, a copy-number variant nematode-resistance locus.

Authors:  Tong Geon Lee; Indrajit Kumar; Brian W Diers; Matthew E Hudson
Journal:  Mol Ecol       Date:  2015-03-30       Impact factor: 6.185

10.  Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655.

Authors:  Yongqing Jiao; Tri D Vuong; Yan Liu; Clinton Meinhardt; Yang Liu; Trupti Joshi; Perry B Cregan; Dong Xu; J Grover Shannon; Henry T Nguyen
Journal:  Theor Appl Genet       Date:  2014-10-15       Impact factor: 5.699

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  11 in total

1.  Systematic Mutagenesis of Serine Hydroxymethyltransferase Reveals an Essential Role in Nematode Resistance.

Authors:  Pramod K Kandoth; Shiming Liu; Elizabeth Prenger; Andrew Ludwig; Naoufal Lakhssassi; Robert Heinz; Zhou Zhou; Amanda Howland; Joshua Gunther; Samantha Eidson; Andi Dhroso; Peter LaFayette; Donna Tucker; Sarah Johnson; James Anderson; Alaa Alaswad; Silvia R Cianzio; Wayne A Parrott; Dmitry Korkin; Khalid Meksem; Melissa G Mitchum
Journal:  Plant Physiol       Date:  2017-09-14       Impact factor: 8.340

Review 2.  Breeding for disease resistance in soybean: a global perspective.

Authors:  Feng Lin; Sushil Satish Chhapekar; Caio Canella Vieira; Marcos Paulo Da Silva; Alejandro Rojas; Dongho Lee; Nianxi Liu; Esteban Mariano Pardo; Yi-Chen Lee; Zhimin Dong; Jose Baldin Pinheiro; Leonardo Daniel Ploper; John Rupe; Pengyin Chen; Dechun Wang; Henry T Nguyen
Journal:  Theor Appl Genet       Date:  2022-07-05       Impact factor: 5.699

3.  Disease resistance through impairment of α-SNAP-NSF interaction and vesicular trafficking by soybean Rhg1.

Authors:  Adam M Bayless; John M Smith; Junqi Song; Patrick H McMinn; Alice Teillet; Benjamin K August; Andrew F Bent
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

4.  An atypical N-ethylmaleimide sensitive factor enables the viability of nematode-resistant Rhg1 soybeans.

Authors:  Adam M Bayless; Ryan W Zapotocny; Derrick J Grunwald; Kaela K Amundson; Brian W Diers; Andrew F Bent
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-25       Impact factor: 11.205

5.  Effective identification of soybean candidate genes involved in resistance to soybean cyst nematode via direct whole genome re-sequencing of two segregating mutants.

Authors:  Shiming Liu; Fengyong Ge; Wenkun Huang; David A Lightfoot; Deliang Peng
Journal:  Theor Appl Genet       Date:  2019-06-27       Impact factor: 5.699

6.  Early transcriptional responses to soybean cyst nematode HG Type 0 show genetic differences among resistant and susceptible soybeans.

Authors:  Esmaeil Miraeiz; Usawadee Chaiprom; Alireza Afsharifar; Akbar Karegar; Jenny M Drnevich; Matthew E Hudson
Journal:  Theor Appl Genet       Date:  2019-10-01       Impact factor: 5.699

7.  Novel resistance strategies to soybean cyst nematode (SCN) in wild soybean.

Authors:  Janice Kofsky; Hengyou Zhang; Bao-Hua Song
Journal:  Sci Rep       Date:  2021-04-12       Impact factor: 4.996

8.  Evaluation of antixenosis in soybean against Spodoptera litura by dual-choice assay aided by a statistical analysis model: Discovery of a novel antixenosis in Peking.

Authors:  Mariko Yano; Takato Inoue; Ryu Nakata; Masayoshi Teraishi; Naoko Yoshinaga; Hajime Ono; Yutaka Okumoto; Naoki Mori
Journal:  J Pestic Sci       Date:  2021-05-20       Impact factor: 2.529

9.  Whole-genome re-sequencing reveals the impact of the interaction of copy number variants of the rhg1 and Rhg4 genes on broad-based resistance to soybean cyst nematode.

Authors:  Gunvant B Patil; Naoufal Lakhssassi; Jinrong Wan; Li Song; Zhou Zhou; Mariola Klepadlo; Tri D Vuong; Adrian O Stec; Sondus S Kahil; Vincent Colantonio; Babu Valliyodan; J Hollis Rice; Sarbottam Piya; Tarek Hewezi; Robert M Stupar; Khalid Meksem; Henry T Nguyen
Journal:  Plant Biotechnol J       Date:  2019-02-20       Impact factor: 9.803

10.  Mapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations.

Authors:  Sivakumar Swaminathan; Nilwala S Abeysekara; Joshua M Knight; Min Liu; Jia Dong; Matthew E Hudson; Madan K Bhattacharyya; Silvia R Cianzio
Journal:  Theor Appl Genet       Date:  2018-03-26       Impact factor: 5.699

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