Literature DB >> 27581284

Pooled shRNA Screening in Mammalian Cells as a Functional Genomic Discovery Platform.

Katarzyna Jastrzebski1, Bastiaan Evers1, Roderick L Beijersbergen2.   

Abstract

Functional genomic screens using shRNA technology are a great tool in biomedical research. As more labs gain access to the necessary reagents and technology to perform such screens, some may lack in-depth knowledge on the difficulties often encountered. With this protocol, we aim to point out the most important caveats of performing shRNA based screens and provide a streamlined workflow that can be easily adapted to meet the specific needs of any particular screening project.

Entities:  

Keywords:  Functional genetics; RNAi; Screens; shRNA

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Year:  2016        PMID: 27581284     DOI: 10.1007/978-1-4939-6337-9_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  2 in total

1.  A loss-of-adhesion CRISPR-Cas9 screening platform to identify cell adhesion-regulatory proteins and signaling pathways.

Authors:  Martin F M de Rooij; Yvonne J Thus; Nathalie Swier; Roderick L Beijersbergen; Steven T Pals; Marcel Spaargaren
Journal:  Nat Commun       Date:  2022-04-19       Impact factor: 17.694

2.  A quantitative shRNA screen identifies ATP1A1 as a gene that regulates cytotoxicity by aurilide B.

Authors:  Shohei Takase; Rumi Kurokawa; Daisuke Arai; Kind Kanemoto Kanto; Tatsufumi Okino; Yoichi Nakao; Tetsuo Kushiro; Minoru Yoshida; Ken Matsumoto
Journal:  Sci Rep       Date:  2017-05-17       Impact factor: 4.379

  2 in total

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