Literature DB >> 27580024

Therapeutic design of peptide modulators of protein-protein interactions in membranes.

Tracy A Stone1, Charles M Deber2.   

Abstract

Membrane proteins play the central roles in a variety of cellular processes, ranging from nutrient uptake and signalling, to cell-cell communication. Their biological functions are directly related to how they fold and assemble; defects often lead to disease. Protein-protein interactions (PPIs) within the membrane are therefore of great interest as therapeutic targets. Here we review the progress in the application of membrane-insertable peptides for the disruption or stabilization of membrane-based PPIs. We describe the design and preparation of transmembrane peptide mimics; and of several categories of peptidomimetics used for study, including d-enantiomers, non-natural amino acids, peptoids, and β-peptides. Further aspects of the review describe modifications to membrane-insertable peptides, including lipidation and cyclization via hydrocarbon stapling. These approaches provide a pathway toward the development of metabolically stable, non-toxic, and efficacious peptide modulators of membrane-based PPIs. This article is part of a Special Issue entitled: Lipid order/lipid defects and lipid-control of protein activity edited by Dirk Schneider.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Hydrocarbon staple; Lipidation; Peptide; Peptidomimetics; Protein–protein interaction (PPI); Transmembrane

Mesh:

Substances:

Year:  2016        PMID: 27580024     DOI: 10.1016/j.bbamem.2016.08.013

Source DB:  PubMed          Journal:  Biochim Biophys Acta Biomembr        ISSN: 0005-2736            Impact factor:   3.747


  21 in total

1.  De novo designed transmembrane peptides activating the α5β1 integrin.

Authors:  Marco Mravic; Hailin Hu; Zhenwei Lu; Joel S Bennett; Charles R Sanders; A Wayne Orr; William F DeGrado
Journal:  Protein Eng Des Sel       Date:  2018-05-01       Impact factor: 1.650

2.  Structure of the EmrE multidrug transporter and its use for inhibitor peptide design.

Authors:  Victor Ovchinnikov; Tracy A Stone; Charles M Deber; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-06       Impact factor: 11.205

3.  Peptidomimetic inhibitors of APC-Asef interaction block colorectal cancer migration.

Authors:  Haiming Jiang; Rong Deng; Xiuyan Yang; Jialin Shang; Shaoyong Lu; Yanlong Zhao; Kun Song; Xinyi Liu; Qiufen Zhang; Yu Chen; Y Eugene Chinn; Geng Wu; Jian Li; Guoqiang Chen; Jianxiu Yu; Jian Zhang
Journal:  Nat Chem Biol       Date:  2017-07-24       Impact factor: 15.040

Review 4.  Membrane receptor activation mechanisms and transmembrane peptide tools to elucidate them.

Authors:  Justin M Westerfield; Francisco N Barrera
Journal:  J Biol Chem       Date:  2019-12-25       Impact factor: 5.157

5.  HawkRank: a new scoring function for protein-protein docking based on weighted energy terms.

Authors:  Ting Feng; Fu Chen; Yu Kang; Huiyong Sun; Hui Liu; Dan Li; Feng Zhu; Tingjun Hou
Journal:  J Cheminform       Date:  2017-12-28       Impact factor: 5.514

6.  A novel pH-dependent membrane peptide that binds to EphA2 and inhibits cell migration.

Authors:  Daiane S Alves; Justin M Westerfield; Xiaojun Shi; Vanessa P Nguyen; Katherine M Stefanski; Kristen R Booth; Soyeon Kim; Jennifer Morrell-Falvey; Bing-Cheng Wang; Steven M Abel; Adam W Smith; Francisco N Barrera
Journal:  Elife       Date:  2018-09-17       Impact factor: 8.140

Review 7.  Annotation of Peptide Structures Using SMILES and Other Chemical Codes-Practical Solutions.

Authors:  Piotr Minkiewicz; Anna Iwaniak; Małgorzata Darewicz
Journal:  Molecules       Date:  2017-11-27       Impact factor: 4.411

Review 8.  Bioluminescence Resonance Energy Transfer as a Method to Study Protein-Protein Interactions: Application to G Protein Coupled Receptor Biology.

Authors:  Chayma El Khamlichi; Flora Reverchon-Assadi; Nadège Hervouet-Coste; Lauren Blot; Eric Reiter; Séverine Morisset-Lopez
Journal:  Molecules       Date:  2019-02-01       Impact factor: 4.411

9.  Activity of a Synthetic Peptide Targeting MgtC on Pseudomonas aeruginosa Intramacrophage Survival and Biofilm Formation.

Authors:  Malika Moussouni; Pauline Nogaret; Preeti Garai; Bérengère Ize; Eric Vivès; Anne-Béatrice Blanc-Potard
Journal:  Front Cell Infect Microbiol       Date:  2019-04-02       Impact factor: 5.293

10.  Activity of a novel antimicrobial peptide against Pseudomonas aeruginosa biofilms.

Authors:  Trevor Beaudoin; Tracy A Stone; Miroslawa Glibowicka; Christina Adams; Yvonne Yau; Saumel Ahmadi; Christine E Bear; Hartmut Grasemann; Valerie Waters; Charles M Deber
Journal:  Sci Rep       Date:  2018-10-03       Impact factor: 4.379

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