| Literature DB >> 27578989 |
Yue Xu1, Cunye Yan2, Zongyao Hao1, Jun Zhou1, Song Fan1, Sheng Tai1, Cheng Yang1, Li Zhang1, Chaozhao Liang1.
Abstract
BACKGROUND ANDEntities:
Keywords: BHMT; cancer risk; meta-analysis; polymorphism; susceptibility
Year: 2016 PMID: 27578989 PMCID: PMC5001659 DOI: 10.2147/OTT.S103901
Source DB: PubMed Journal: Onco Targets Ther ISSN: 1178-6930 Impact factor: 4.147
Figure 1Flow diagram of the inclusion and exclusion of studies in this meta-analysis.
Main characteristics of studies regarding the association between BHMT gene rs3733890 polymorphism and cancer risk
| SNP | Authors | Year | Ethnicity | Genotyping method | Source of control | Cancer type | Cases
| Controls
| ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GG | GA | AA | GG | GA | AA | |||||||
| rs3733890 | de Silva et al | 2012 | Mix | PCR-RFLP | PB | HNSCC | 117 | 119 | 36 | 212 | 227 | 51 |
| Xu et al | 2008 | Caucasian | TaqMan | CB | BC | 510 | 443 | 108 | 530 | 456 | 122 | |
| Mostowska et al | 2011 | Caucasian | PCR-RFLP | HB | UCC | 70 | 46 | 8 | 72 | 77 | 19 | |
| Pawlik et al | 2012 | Caucasian | PCR-RFLP | HB | OC | 64 | 47 | 23 | 67 | 76 | 17 | |
| Hazra et al | 2007 | Caucasian | TaqMan | HB | CRA | 40 | 237 | 248 | 57 | 223 | 245 | |
| Xu et al | 2008 | Caucasian | TaqMan | PB | BC | 192 | 183 | 43 | 128 | 108 | 31 | |
| An | 2008 | Asian | TaqMan | PB | LC | 315 | 310 | 73 | 557 | 545 | 138 | |
Abbreviations: BC, breast cancer; CB, community-based; CRA, colorectal adenoma; HB, hospital-based; HNSCC, head and neck squamous cell carcinoma; LC, liver cancer; OC, ovarian cancer; PB, population-based; PCR-RFLP, polymerase chain reaction-restriction fragment length polymorphism; SNP, single nucleotide polymorphism; UCC, uterine cervical carcinoma.
Results of meta-analysis for the association between BMHT gene polymorphism and cancer susceptibility
| Variables (rs3733890) | Case/control | A vs G
| AA vs GG
| AG vs GG
| ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | OR (95% CI) | ||||||||
| Total | 2,832/3,958 | 0.992 (0.924–1.066) | 0.305 | 16.4 | 1.013 (0.863–1.188) | 0.203 | 29.6 | 0.980 (0.839–1.145) | 0.099 | 43.8 |
| Genotyping method | ||||||||||
| PCR-RFLP | 530/818 | 0.950 (0.806–1.120) | 0.057 | 65.2 | 1.077 (0.752–1.542) | 0.079 | 60.7 | 0.765 (0.569–1.028) | 0.233 | 31.4 |
| TaqMan | 2,302/3,140 | 1.002 (0.926–1.085) | 0.771 | 0.0 | 0.997 (0.835–1.192) | 0.357 | 7.3 | 1.056 (0.933–1.195) | 0.365 | 5.6 |
| Ethnicity | ||||||||||
| Caucasian | 0.985 (0.901–1.077) | 0.155 | 40.0 | 1.005 (0.822–1.229) | 0.117 | 45.8 | 0.961 (0.740–1.248) | 0.032 | 62.2 | |
| Asian | 0.980 (0.852–1.127) | 0.935 (0.682–1.282) | 1.006 (0.827–1.224) | |||||||
| Mix | 1.071 (0.859–1.335) | 1.279 (0.789–2.073) | 0.950 (0.692–1.304) | |||||||
|
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|
| ||||||||||
| Total | 2,832/3,958 | 0.990 (0.896–1.093) | 0.135 | 38.5 | 0.991 (0.865–1.135) | 0.334 | 12.6 | |||
| Genotyping method | ||||||||||
| PCR-RFLP | 530/818 | 0.842 (0.676–1.050) | 0.138 | 49.6 | 1.210 (0.861–1.700) | 0.100 | 56.6 | |||
| TaqMan | 2,302/3,140 | 1.031 (0.923–1.153) | 0.355 | 7.6 | 0.955 (0.823–1.107) | 0.907 | 0.0 | |||
| Ethnicity | ||||||||||
| Caucasian | 0.985 (0.867–1.120) | 0.045 | 58.9 | 0.974 (0.829–1.145) | 0.267 | 23.1 | ||||
| Asian | 0.992 (0.823–1.195) | 0.933 (0.691–1.259) | ||||||||
| Mix | 1.010 (0.749–1.363) | 1.313 (0.833–2.070) | ||||||||
Notes: I2 (%): 0–25, no heterogeneity; 25–50, modest heterogeneity; >50, high heterogeneity;
P-value of Q-test for heterogeneity test.
Abbreviations: CI, confidence interval; OR, odds ratio; PCR-RFLP, polymerase chain reaction-restriction fragment length polymorphism.
Figure 2Forest plots describing the meta-analysis for the association between the BHMT rs373389 polymorphism and cancer risk.
Notes: (A) Allele contrast (A vs G) and (B) dominant model (AA+AG vs GG). Each square indicates a study, and the area of the squares is proportional to the weight of the study. The diamond represents the summary OR, and the transverse line means 95% CI.
Abbreviations: CI, confidence interval; OR, odds ratio.
Figure 3Sensitivity analysis of BHMT rs3733890 polymorphism in allelic comparison (A vs G).
Notes: The middle vertical solid line is the estimated line. The left-most line is the lower CI limit. The right-most line is the upper CI limit. Each circle is a separate study and indicates OR. The dotted line means 95% CI.
Abbreviations: CI, confidence interval; OR, odds ratio.
Figure 4Begg’s funnel plot for publication bias test of BHMT rs3733890 polymorphism in allelic comparison (A vs G).
Notes: The x-axis is log (OR) and the y-axis is natural logarithm of OR. The horizontal line in the figure means the overall estimated log (OR). The two diagonal lines indicate the pseudo 95% confidence limits of the effect estimate.
Abbreviations: OR, odds ratio; log (OR), log-transformed OR; SE, standard error.
Methodological quality of the included studies according to the Newcastle-Ottawa scale
| SNP | Authors | Ethnicity | Adequacy of case definition | Representativeness of the cases | Selection of controls | Definition of controls | Comparability cases/controls | Ascertainment of exposure | Same method of ascertainment | Nonresponse rate |
|---|---|---|---|---|---|---|---|---|---|---|
| da Silva et al | Mix | * | NA | NA | * | ** | * | * | * | |
| Xu et al | Caucasian | * | * | NA | NA | ** | * | * | * | |
| Mostowska et al | Caucasian | * | * | NA | * | ** | * | * | * | |
| Pawlik et al | Caucasian | * | * | NA | * | * | * | * | * | |
| Hazra et al | Caucasian | * | * | NA | * | ** | * | * | * | |
| Xu et al | Caucasian | * | * | NA | * | ** | * | * | * | |
| An | Asian | NA | NA | NA | * | ** | * | * | * |
Notes: Risk of bias was assessed using the Newcastle-Ottawa scale. A higher overall score corresponds to a lower risk of bias; a score of 5 (out of 9) indicates a high risk of bias. This table identifies “high-quality” choices with *. A study can be awarded a maximum of one asterisk for each numbered item within the selection and exposure categories. A maximum of two asterisks can be given for comparability.
Abbreviations: NA, not available; SNP, single nucleotide polymorphism.
The association between BHMT rs3733890 polymorphism and cancer susceptibility in subgroup meta-analysis of cancer types
| Polymorphism | Comparison | Subgroup | N | Regression model
| ||||
|---|---|---|---|---|---|---|---|---|
| Random | Fixed | |||||||
| rs3733890 | A vs G | Total | 7 | 0.305 | 0.830 | 0.911 | 0.992 (0.915–1.076) | 0.992 (0.924–1.066) |
| HNSCC | 1 | – | 0.544 | – | 1.071 (0.859–1.335) | 1.071 (0.859–1.335) | ||
| BC | 2 | 0.765 | 0.789 | – | 0.985 (0.880–1.102) | 0.985 (0.880–1.102) | ||
| UCC | 1 | – | – | 0.641 (0.445–0.923) | 0.641 (0.445–0.923) | |||
| OC | 1 | – | 0.934 | – | 1.015 (0.721–1.427) | 1.015 (0.721–1.427) | ||
| CRA | 1 | – | 0.346 | – | 1.093 (0.909–1.315) | 1.093 (0.909–1.315) | ||
| LC | 1 | – | 0.780 | – | 0.980 (0.852–1.127) | 0.980 (0.852–1.127) | ||
| AA vs GG | Total | 7 | 0.203 | 0.878 | 0.706 | 1.026 (0.837–1.258) | 1.013 (0.863–1.188) | |
| HNSCC | 1 | – | 0.318 | – | 1.279 (0.789–2.073) | 1.279 (0.789–2.073) | ||
| BC | 2 | 0.986 | 0.519 | – | 0.921 (0.717–1.183) | 0.921 (0.717–1.183) | ||
| UCC | 1 | – | 0.065 | – | 0.433 (0.178–1.054) | 0.433 (0.178–1.054) | ||
| OC | 1 | – | 0.340 | – | 1.416 (0.693–2.894) | 1.416 (0.693–2.894) | ||
| CRA | 1 | – | 0.104 | – | 1.442 (0.928–2.242) | 1.442 (0.928–2.242) | ||
| LC | 1 | – | 0.678 | – | 0.935 (0.682–1.282) | 0.935 (0.682–1.282) | ||
| AG vs GG | Total | 7 | 0.099 | 0.799 | 0.785 | 0.980 (0.839–1.145) | 0.994 (0.894–1.104) | |
| HNSCC | 1 | – | 0.750 | – | 0.950 (0.692–1.304) | 0.950 (0.692–1.304) | ||
| BC | 2 | 0.554 | 0.658 | – | 1.036 (0.886–1.212) | 1.036 (0.886–1.212) | ||
| UCC | 1 | – | 0.052 | – | 0.614 (0.376–1.005) | 0.614 (0.376–1.005) | ||
| OC | 1 | – | 0.088 | – | 0.647 (0.393–1.067) | 0.647 (0.393–1.067) | ||
| CRA | 1 | – | 0.067 | – | 1.514 (0.972–2.360) | 1.514 (0.972–2.360) | ||
| LC | 1 | – | 0.954 | – | 1.006 (0.827–1.224) | 1.006 (0.827–1.224) | ||
| AA+AG vs GG | Total | 7 | 0.135 | 0.840 | 0.924 | 0.984 (0.855–1.132) | 0.990 (0.896–1.093) | |
| HNSCC | 1 | – | 0.947 | – | 1.010 (0.749–1.363) | 1.010 (0.749–1.363) | ||
| BC | 2 | – | 0.880 | – | 1.011 (0.872–1.173) | 1.011 (0.872–1.173) | ||
| UCC | 1 | – | – | 0.579 (0.362–0.924) | 0.579 (0.362–0.924) | |||
| OC | 1 | – | 0.312 | – | 0.788 (0.496–1.251) | 0.788 (0.496–1.251) | ||
| CRA | 1 | – | 0.071 | – | 1.313 (0.833–2.070) | 1.313 (0.833–2.070) | ||
| LC | 1 | – | 0.929 | – | 0.992 (0.823–1.195) | 0.992 (0.823–1.195) | ||
| AA vs AG+GG | Total | 7 | 0.334 | 0.895 | 0.572 | 0.995 (0.855–1.157) | 0.991 (0.865–1.135) | |
| HNSCC | 1 | – | 0.241 | – | 1.313 (0.833–2.070) | 1.313 (0.833–2.070) | ||
| BC | 2 | 0.867 | 0.416 | – | 0.905 (0.713–1.150) | 0.906 (0.713–1.150) | ||
| UCC | 1 | – | 0.162 | – | 0.541 (0.229–1.279) | 0.541 (0.229–1.279) | ||
| OC | 1 | – | 0.106 | – | 1.743 (0.888–3.420) | 1.743 (0.888–3.420) | ||
| CRA | 1 | – | 0.853 | – | 1.023 (0.803–1.304) | 1.023 (0.803–1.304) | ||
| LC | 1 | – | 0.649 | – | 0.933 (0.691–1.259) | 0.933 (0.691–1.259) | ||
Note: The values shown in bold indicate that when P<0.05, the association between BHMT rs3733890 polymorphism and cancer risk could be regarded as statistically significant.
Abbreviations: BC, breast cancer; CRA, colorectal adenoma; HNSCC, head and neck squamous cell carcinoma; LC, liver cancer; OC, ovarian cancer; UCC, uterine cervical carcinoma; PH, P-value for heterogeneity test; PZ, P-value for Z test (significance test); PE, P-value for Egger’s test.