Literature DB >> 27576906

Inactivation of Cancer Mutations Utilizing CRISPR/Cas9.

Christina Gebler1, Tim Lohoff1, Maciej Paszkowski-Rogacz1, Jovan Mircetic1, Debojyoti Chakraborty1, Aylin Camgoz1, Martin V Hamann1, Mirko Theis1, Christian Thiede2,3, Frank Buchholz1,4,3,5.   

Abstract

Although whole-genome sequencing has uncovered a large number of mutations that drive tumorigenesis, functional ratification for most mutations remains sparse. Here, we present an approach to test functional relevance of tumor mutations employing CRISPR/Cas9. Combining comprehensive sgRNA design and an efficient reporter assay to nominate efficient and selective sgRNAs, we establish a pipeline to dissect roles of cancer mutations with potential applicability to personalized medicine and future therapeutic use.
© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

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Year:  2016        PMID: 27576906      PMCID: PMC6284257          DOI: 10.1093/jnci/djw183

Source DB:  PubMed          Journal:  J Natl Cancer Inst        ISSN: 0027-8874            Impact factor:   13.506


  17 in total

Review 1.  Nucleophosmin mutations in acute myeloid leukemia: a tale of protein unfolding and mislocalization.

Authors:  Luca Federici; Brunangelo Falini
Journal:  Protein Sci       Date:  2013-03-18       Impact factor: 6.725

2.  Genome engineering using the CRISPR-Cas9 system.

Authors:  F Ann Ran; Patrick D Hsu; Jason Wright; Vineeta Agarwala; David A Scott; Feng Zhang
Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

3.  An inhibitor of nonhomologous end-joining abrogates double-strand break repair and impedes cancer progression.

Authors:  Mrinal Srivastava; Mridula Nambiar; Sheetal Sharma; Subhas S Karki; G Goldsmith; Mahesh Hegde; Sujeet Kumar; Monica Pandey; Ram K Singh; Pritha Ray; Renuka Natarajan; Madhura Kelkar; Abhijit De; Bibha Choudhary; Sathees C Raghavan
Journal:  Cell       Date:  2012-12-21       Impact factor: 41.582

4.  Engineered CRISPR-Cas9 nucleases with altered PAM specificities.

Authors:  Benjamin P Kleinstiver; Michelle S Prew; Shengdar Q Tsai; Ved V Topkar; Nhu T Nguyen; Zongli Zheng; Andrew P W Gonzales; Zhuyun Li; Randall T Peterson; Jing-Ruey Joanna Yeh; Martin J Aryee; J Keith Joung
Journal:  Nature       Date:  2015-06-22       Impact factor: 49.962

5.  Generation of mouse models of myeloid malignancy with combinatorial genetic lesions using CRISPR-Cas9 genome editing.

Authors:  Dirk Heckl; Monika S Kowalczyk; David Yudovich; Roger Belizaire; Rishi V Puram; Marie E McConkey; Anne Thielke; Jon C Aster; Aviv Regev; Benjamin L Ebert
Journal:  Nat Biotechnol       Date:  2014-06-22       Impact factor: 54.908

6.  Nucleosomes impede Cas9 access to DNA in vivo and in vitro.

Authors:  Max A Horlbeck; Lea B Witkowsky; Benjamin Guglielmi; Joseph M Replogle; Luke A Gilbert; Jacqueline E Villalta; Sharon E Torigoe; Robert Tjian; Jonathan S Weissman
Journal:  Elife       Date:  2016-03-17       Impact factor: 8.140

7.  Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.

Authors:  John G Doench; Nicolo Fusi; Meagan Sullender; Mudra Hegde; Emma W Vaimberg; Jennifer Listgarten; Katherine F Donovan; Ian Smith; Zuzana Tothova; Craig Wilen; Robert Orchard; Herbert W Virgin; David E Root
Journal:  Nat Biotechnol       Date:  2016-01-18       Impact factor: 54.908

8.  CRISPR/Cas9 nickase-mediated disruption of hepatitis B virus open reading frame S and X.

Authors:  Madina Karimova; Niklas Beschorner; Werner Dammermann; Jan Chemnitz; Daniela Indenbirken; Jan-Hendrik Bockmann; Adam Grundhoff; Stefan Lüth; Frank Buchholz; Julian Schulze zur Wiesch; Joachim Hauber
Journal:  Sci Rep       Date:  2015-09-03       Impact factor: 4.379

9.  Mutational landscape and significance across 12 major cancer types.

Authors:  Cyriac Kandoth; Michael D McLellan; Fabio Vandin; Kai Ye; Beifang Niu; Charles Lu; Mingchao Xie; Qunyuan Zhang; Joshua F McMichael; Matthew A Wyczalkowski; Mark D M Leiserson; Christopher A Miller; John S Welch; Matthew J Walter; Michael C Wendl; Timothy J Ley; Richard K Wilson; Benjamin J Raphael; Li Ding
Journal:  Nature       Date:  2013-10-17       Impact factor: 49.962

Review 10.  Oncolytic viruses: a new class of immunotherapy drugs.

Authors:  Howard L Kaufman; Frederick J Kohlhapp; Andrew Zloza
Journal:  Nat Rev Drug Discov       Date:  2015-09       Impact factor: 84.694

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  13 in total

Review 1.  Applications of CRISPR/Cas9 in retinal degenerative diseases.

Authors:  Ying-Qian Peng; Luo-Sheng Tang; Shigeo Yoshida; Ye-Di Zhou
Journal:  Int J Ophthalmol       Date:  2017-04-18       Impact factor: 1.779

2.  Gene editing using CRISPR-Cas9 for the treatment of lung cancer.

Authors:  Andres Castillo
Journal:  Colomb Med (Cali)       Date:  2016-12-30

3.  miR-23a promotes invasion of glioblastoma via HOXD10-regulated glial-mesenchymal transition.

Authors:  Kazuhiro Yachi; Masumi Tsuda; Shinji Kohsaka; Lei Wang; Yoshitaka Oda; Satoshi Tanikawa; Yusuke Ohba; Shinya Tanaka
Journal:  Signal Transduct Target Ther       Date:  2018-12-28

4.  Selective disruption of an oncogenic mutant allele by CRISPR/Cas9 induces efficient tumor regression.

Authors:  Taeyoung Koo; A-Rum Yoon; Hee-Yeon Cho; Sangsu Bae; Chae-Ok Yun; Jin-Soo Kim
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

5.  Targeted Disruption of V600E-Mutant BRAF Gene by CRISPR-Cpf1.

Authors:  Meijia Yang; Heng Wei; Yuelong Wang; Jiaojiao Deng; Yani Tang; Liangxue Zhou; Gang Guo; Aiping Tong
Journal:  Mol Ther Nucleic Acids       Date:  2017-05-17       Impact factor: 8.886

Review 6.  Glioblastoma: new therapeutic strategies to address cellular and genomic complexity.

Authors:  Xue Cai; Michael E Sughrue
Journal:  Oncotarget       Date:  2017-12-20

7.  Targeting mutant KRAS with CRISPR-Cas9 controls tumor growth.

Authors:  Wonjoo Kim; Sangeun Lee; Han Sang Kim; Minjung Song; Yong Hoon Cha; Young-Hoon Kim; Jeonghong Shin; Eun-Seo Lee; Yeonsoo Joo; Jae J Song; Eun Ju Choi; Jae W Choi; Jinu Lee; Moonkyung Kang; Jong In Yook; Min Goo Lee; Yeon-Soo Kim; Soonmyung Paik; Hyongbum Henry Kim
Journal:  Genome Res       Date:  2018-01-11       Impact factor: 9.043

8.  STK3 is a therapeutic target for a subset of acute myeloid leukemias.

Authors:  Aylin Camgoz; Maciej Paszkowski-Rogacz; Shankha Satpathy; Martin Wermke; Martin V Hamann; Malte von Bonin; Chunaram Choudhary; Stefan Knapp; Frank Buchholz
Journal:  Oncotarget       Date:  2018-05-22

Review 9.  Neural Stem Cells of the Subventricular Zone as the Origin of Human Glioblastoma Stem Cells. Therapeutic Implications.

Authors:  Esperanza R Matarredona; Angel M Pastor
Journal:  Front Oncol       Date:  2019-08-20       Impact factor: 6.244

Review 10.  CRISPR/Cas9 Application for Gene Copy Fate Survey of Polyploid Vertebrates.

Authors:  Fanqian Yin; Wenfu Liu; Jing Chai; Bin Lu; Robert W Murphy; Jing Luo
Journal:  Front Genet       Date:  2018-07-20       Impact factor: 4.599

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