Literature DB >> 27575621

Impact of outdated gene annotations on pathway enrichment analysis.

Lina Wadi1, Mona Meyer1, Joel Weiser1, Lincoln D Stein1,2, Jüri Reimand1,3.   

Abstract

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Year:  2016        PMID： 27575621     DOI： 10.1038/nmeth.3963

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  49 in total

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3.  Game-theoretic link relevance indexing on genome-wide expression dataset identifies putative salient genes with potential etiological and diapeutics role in colorectal cancer.

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5.  Evaluating the predictive accuracy of curated biological pathways in a public knowledgebase.

Authors:  Adam J Wright; Marija Orlic-Milacic; Karen Rothfels; Joel Weiser; Quang M Trinh; Bijay Jassal; Robin A Haw; Lincoln D Stein
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6.  Tumor suppressor PNRC1 blocks rRNA maturation by recruiting the decapping complex to the nucleolus.

Authors:  Marco Gaviraghi; Claudia Vivori; Yerma Pareja Sanchez; Francesca Invernizzi; Angela Cattaneo; Benedetta Maria Santoliquido; Michela Frenquelli; Simona Segalla; Angela Bachi; Claudio Doglioni; Vicent Pelechano; Davide Cittaro; Giovanni Tonon
Journal:  EMBO J       Date:  2018-10-29       Impact factor: 11.598

7.  Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap.

Authors:  Jüri Reimand; Ruth Isserlin; Veronique Voisin; Mike Kucera; Christian Tannus-Lopes; Asha Rostamianfar; Lina Wadi; Mona Meyer; Jeff Wong; Changjiang Xu; Daniele Merico; Gary D Bader
Journal:  Nat Protoc       Date:  2019-02       Impact factor: 13.491

8.  Monitoring changes in the Gene Ontology and their impact on genomic data analysis.

Authors:  Matthew Jacobson; Adriana Estela Sedeño-Cortés; Paul Pavlidis
Journal:  Gigascience       Date:  2018-08-01       Impact factor: 6.524

9.  Expansion of the Gene Ontology knowledgebase and resources.

Authors: 
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

10.  A Novel Metric to Quantify the Effect of Pathway Enrichment Evaluation With Respect to Biomedical Text-Mined Terms: Development and Feasibility Study.

Authors:  Xuan Qin; Xinzhi Yao; Jingbo Xia
Journal:  JMIR Med Inform       Date:  2021-06-18
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