Literature DB >> 27573183

Stable isotope labeling methods for DNA.

Frank H T Nelissen1, Marco Tessari2, Sybren S Wijmenga3, Hans A Heus4.   

Abstract

NMR is a powerful method for studying proteins and nucleic acids in solution. The study of nucleic acids by NMR is far more challenging than for proteins, which is mainly due to the limited number of building blocks and unfavorable spectral properties. For NMR studies of DNA molecules, (site specific) isotope enrichment is required to facilitate specific NMR experiments and applications. Here, we provide a comprehensive review of isotope-labeling strategies for obtaining stable isotope labeled DNA as well as specifically stable isotope labeled building blocks required for enzymatic DNA synthesis.
Copyright © 2016 Elsevier B.V. All rights reserved.

Keywords:  DNA synthesis; Labeling methods; NMR; Nucleic acids; Nucleotides; Site-specific

Mesh:

Substances:

Year:  2016        PMID: 27573183     DOI: 10.1016/j.pnmrs.2016.06.001

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN: 0079-6565            Impact factor:   9.795


  6 in total

1.  A methyl-TROSY approach for NMR studies of high-molecular-weight DNA with application to the nucleosome core particle.

Authors:  Gili Abramov; Algirdas Velyvis; Enrico Rennella; Leo E Wong; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-26       Impact factor: 11.205

2.  Synthesis and incorporation of 13C-labeled DNA building blocks to probe structural dynamics of DNA by NMR.

Authors:  Felix Nußbaumer; Michael Andreas Juen; Catherina Gasser; Johannes Kremser; Thomas Müller; Martin Tollinger; Christoph Kreutz
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

3.  Coupling between conformational dynamics and catalytic function at the active site of the lead-dependent ribozyme.

Authors:  Neil A White; Minako Sumita; Victor E Marquez; Charles G Hoogstraten
Journal:  RNA       Date:  2018-08-15       Impact factor: 4.942

4.  NMR solution structure of an asymmetric intermolecular leaped V-shape G-quadruplex: selective recognition of the d(G2NG3NG4) sequence motif by a short linear G-rich DNA probe.

Authors:  Chanjuan Wan; Wenqiang Fu; Haitao Jing; Na Zhang
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

Review 5.  15N labeling and analysis of 13C-15N and 1H-15N couplings in studies of the structures and chemical transformations of nitrogen heterocycles.

Authors:  Sergey L Deev; Igor A Khalymbadzha; Tatyana S Shestakova; Valery N Charushin; Oleg N Chupakhin
Journal:  RSC Adv       Date:  2019-08-28       Impact factor: 4.036

6.  Nucleic acid-protein interfaces studied by MAS solid-state NMR spectroscopy.

Authors:  Philipp Innig Aguion; Alexander Marchanka; Teresa Carlomagno
Journal:  J Struct Biol X       Date:  2022-08-18
  6 in total

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