Literature DB >> 27573112

Are multi-omics enough?

Cristina Vilanova1, Manuel Porcar1.   

Abstract

Mesh:

Year:  2016        PMID: 27573112     DOI: 10.1038/nmicrobiol.2016.101

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   17.745


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  15 in total

1.  Insights into the phylogeny and coding potential of microbial dark matter.

Authors:  Christian Rinke; Patrick Schwientek; Alexander Sczyrba; Natalia N Ivanova; Iain J Anderson; Jan-Fang Cheng; Aaron Darling; Stephanie Malfatti; Brandon K Swan; Esther A Gies; Jeremy A Dodsworth; Brian P Hedlund; George Tsiamis; Stefan M Sievert; Wen-Tso Liu; Jonathan A Eisen; Steven J Hallam; Nikos C Kyrpides; Ramunas Stepanauskas; Edward M Rubin; Philip Hugenholtz; Tanja Woyke
Journal:  Nature       Date:  2013-07-14       Impact factor: 49.962

2.  Impact of genome reduction on bacterial metabolism and its regulation.

Authors:  Eva Yus; Tobias Maier; Konstantinos Michalodimitrakis; Vera van Noort; Takuji Yamada; Wei-Hua Chen; Judith A H Wodke; Marc Güell; Sira Martínez; Ronan Bourgeois; Sebastian Kühner; Emanuele Raineri; Ivica Letunic; Olga V Kalinina; Michaela Rode; Richard Herrmann; Ricardo Gutiérrez-Gallego; Robert B Russell; Anne-Claude Gavin; Peer Bork; Luis Serrano
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

3.  Predicting bacterial community assemblages using an artificial neural network approach.

Authors:  Peter Larsen; Yang Dai; Frank R Collart
Journal:  Methods Mol Biol       Date:  2015

4.  Diverse uncultivated ultra-small bacterial cells in groundwater.

Authors:  Birgit Luef; Kyle R Frischkorn; Kelly C Wrighton; Hoi-Ying N Holman; Giovanni Birarda; Brian C Thomas; Andrea Singh; Kenneth H Williams; Cristina E Siegerist; Susannah G Tringe; Kenneth H Downing; Luis R Comolli; Jillian F Banfield
Journal:  Nat Commun       Date:  2015-02-27       Impact factor: 14.919

5.  A new antibiotic kills pathogens without detectable resistance.

Authors:  Losee L Ling; Tanja Schneider; Aaron J Peoples; Amy L Spoering; Ina Engels; Brian P Conlon; Anna Mueller; Till F Schäberle; Dallas E Hughes; Slava Epstein; Michael Jones; Linos Lazarides; Victoria A Steadman; Douglas R Cohen; Cintia R Felix; K Ashley Fetterman; William P Millett; Anthony G Nitti; Ashley M Zullo; Chao Chen; Kim Lewis
Journal:  Nature       Date:  2015-01-07       Impact factor: 49.962

6.  Scaling laws predict global microbial diversity.

Authors:  Kenneth J Locey; Jay T Lennon
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-02       Impact factor: 11.205

7.  Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes.

Authors:  Mads Albertsen; Philip Hugenholtz; Adam Skarshewski; Kåre L Nielsen; Gene W Tyson; Per H Nielsen
Journal:  Nat Biotechnol       Date:  2013-05-26       Impact factor: 54.908

8.  d-OptCom: Dynamic multi-level and multi-objective metabolic modeling of microbial communities.

Authors:  Ali R Zomorrodi; Mohammad Mazharul Islam; Costas D Maranas
Journal:  ACS Synth Biol       Date:  2014-02-28       Impact factor: 5.110

9.  Eubacteria and archaea communities in seven mesophile anaerobic digester plants in Germany.

Authors:  Christian Abendroth; Cristina Vilanova; Thomas Günther; Olaf Luschnig; Manuel Porcar
Journal:  Biotechnol Biofuels       Date:  2015-06-18       Impact factor: 6.040

10.  Unveiling Bacterial Interactions through Multidimensional Scaling and Dynamics Modeling.

Authors:  Pedro Dorado-Morales; Cristina Vilanova; Carlos P Garay; Jose Manuel Martí; Manuel Porcar
Journal:  Sci Rep       Date:  2015-12-16       Impact factor: 4.379

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  13 in total

Review 1.  The role of the gut microbiome in systemic inflammatory disease.

Authors:  Jose C Clemente; Julia Manasson; Jose U Scher
Journal:  BMJ       Date:  2018-01-08

2.  Microbiology: the return of culture.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2016-12-29       Impact factor: 28.547

3.  Cystatin SN is a potent upstream initiator of epithelial-derived type 2 inflammation in chronic rhinosinusitis.

Authors:  Angela L Nocera; Sarina K Mueller; Alan D Workman; Dawei Wu; Kristen McDonnell; Peter M Sadow; Mansoor M Amiji; Benjamin S Bleier
Journal:  J Allergy Clin Immunol       Date:  2022-05-31       Impact factor: 14.290

Review 4.  Integration and Potential Application Ability of Culturable Functional Microorganism in Oil Tea Camellia.

Authors:  Caixia Liu; Longsheng Chen; Zhilong He; Zhen Zhang; Yanming Xu; Zhigang Li; Yinghe Peng; Nan Deng; Yongzhong Chen
Journal:  Indian J Microbiol       Date:  2020-09-01       Impact factor: 2.461

5.  Profiling of Diagnostic Information of and Latent Susceptibility to Bacterial Keratitis From the Perspective of Ocular Bacterial Microbiota.

Authors:  Zhichao Ren; Qing Liu; Wenfeng Li; Xian Wu; Yanling Dong; Yusen Huang
Journal:  Front Cell Infect Microbiol       Date:  2021-05-13       Impact factor: 5.293

6.  Bioprospecting challenges in unusual environments.

Authors:  Kristie Tanner; Cristina Vilanova; Manuel Porcar
Journal:  Microb Biotechnol       Date:  2017-06-14       Impact factor: 5.813

7.  Intestinal Surgery Contributes to Acute Cerebellar Ataxia Through Gut Brain Axis.

Authors:  Jie Yu; Yuanming Fan; Li Wang; Yanjuan Huang; Jingyi Xia; Le Ding; Chun-Feng Wu; Xiaopeng Lu; Gaoxiang Ma; Samuel Kim; Guo Zheng; Hu Guo; Gang Zhang
Journal:  Front Neurol       Date:  2019-09-20       Impact factor: 4.003

Review 8.  Art-omics: multi-omics meet archaeology and art conservation.

Authors:  Cristina Vilanova; Manuel Porcar
Journal:  Microb Biotechnol       Date:  2019-08-27       Impact factor: 5.813

9.  Diagnostic information Profiling and Evaluation of Causative Fungi of Fungal Keratitis Using High-throughput Internal Transcribed Spacer Sequencing.

Authors:  Zhichao Ren; Qing Liu; Yuqian Wang; Yanling Dong; Yusen Huang
Journal:  Sci Rep       Date:  2020-02-03       Impact factor: 4.379

10.  High Culturable Bacterial Diversity From a European Desert: The Tabernas Desert.

Authors:  Esther Molina-Menor; Helena Gimeno-Valero; Javier Pascual; Juli Peretó; Manuel Porcar
Journal:  Front Microbiol       Date:  2021-01-08       Impact factor: 5.640

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