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Literature DB >> 27572652

Bacterial genomics: Microbial GWAS coming of age.

Daniel Falush¹.

Abstract

Mesh：

Year: 2016 PMID： 27572652 DOI： 10.1038/nmicrobiol.2016.59

Source DB: PubMed Journal: Nat Microbiol ISSN： 2058-5276 Impact factor: 17.745

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10 in total

Review 1. Molecular Koch's postulates applied to bacterial pathogenicity--a personal recollection 15 years later.

Authors: Stanley Falkow
Journal: Nat Rev Microbiol Date: 2004-01 Impact factor: 60.633

2. Genome-wide association mapping in bacteria?

Authors: Daniel Falush; Rory Bowden
Journal: Trends Microbiol Date: 2006-06-19 Impact factor: 17.079

Review 3. Genome-wide association studies for complex traits: consensus, uncertainty and challenges.

Authors: Mark I McCarthy; Gonçalo R Abecasis; Lon R Cardon; David B Goldstein; Julian Little; John P A Ioannidis; Joel N Hirschhorn
Journal: Nat Rev Genet Date: 2008-05 Impact factor: 53.242

Review 4. The advent of genome-wide association studies for bacteria.

Authors: Peter E Chen; B Jesse Shapiro
Journal: Curr Opin Microbiol Date: 2015-03-31 Impact factor: 7.934

5. Genome-wide molecular dissection of serotype M3 group A Streptococcus strains causing two epidemics of invasive infections.

Authors: Stephen B Beres; Gail L Sylva; Daniel E Sturdevant; Chanel N Granville; Mengyao Liu; Stacy M Ricklefs; Adeline R Whitney; Larye D Parkins; Nancy P Hoe; Gerald J Adams; Donald E Low; Frank R DeLeo; Allison McGeer; James M Musser
Journal: Proc Natl Acad Sci U S A Date: 2004-07-28 Impact factor: 11.205

6. Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter.

Authors: Samuel K Sheppard; Xavier Didelot; Guillaume Meric; Alicia Torralbo; Keith A Jolley; David J Kelly; Stephen D Bentley; Martin C J Maiden; Julian Parkhill; Daniel Falush
Journal: Proc Natl Acad Sci U S A Date: 2013-07-01 Impact factor: 11.205

7. Epidemic Clones, Oceanic Gene Pools, and Eco-LD in the Free Living Marine Pathogen Vibrio parahaemolyticus.

Authors: Yujun Cui; Xianwei Yang; Xavier Didelot; Chenyi Guo; Dongfang Li; Yanfeng Yan; Yiquan Zhang; Yanting Yuan; Huanming Yang; Jian Wang; Jun Wang; Yajun Song; Dongsheng Zhou; Daniel Falush; Ruifu Yang
Journal: Mol Biol Evol Date: 2015-01-19 Impact factor: 16.240

8. A chromosomally integrated bacteriophage in invasive meningococci.

Authors: Emmanuelle Bille; Jean-Ralph Zahar; Agnes Perrin; Sandrine Morelle; Paula Kriz; Keith A Jolley; Martin C J Maiden; Catherine Dervin; Xavier Nassif; Colin R Tinsley
Journal: J Exp Med Date: 2005-06-20 Impact factor: 14.307

9. Identifying lineage effects when controlling for population structure improves power in bacterial association studies.

Authors: Sarah G Earle; Chieh-Hsi Wu; Jane Charlesworth; Nicole Stoesser; N Claire Gordon; Timothy M Walker; Chris C A Spencer; Zamin Iqbal; David A Clifton; Katie L Hopkins; Neil Woodford; E Grace Smith; Nazir Ismail; Martin J Llewelyn; Tim E Peto; Derrick W Crook; Gil McVean; A Sarah Walker; Daniel J Wilson
Journal: Nat Microbiol Date: 2016-04-04 Impact factor: 17.745

10. Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.

Authors: Ragnar P Kristjansson; Asmundur Oddsson; Hannes Helgason; Gardar Sveinbjornsson; Gudny A Arnadottir; Brynjar O Jensson; Aslaug Jonasdottir; Adalbjorg Jonasdottir; G Bragi Walters; Gerald Sulem; Arna Oskarsdottir; Stefania Benonisdottir; Olafur B Davidsson; Gisli Masson; Olafur Th Magnusson; Hilma Holm; Olof Sigurdardottir; Ingileif Jonsdottir; Gudmundur I Eyjolfsson; Isleifur Olafsson; Daniel F Gudbjartsson; Unnur Thorsteinsdottir; Patrick Sulem; Kari Stefansson
Journal: Nat Commun Date: 2016-02-03 Impact factor: 14.919

10 in total

12 in total

Review 1. Population Biology and Comparative Genomics of Campylobacter Species.

Authors: Lennard Epping; Esther-Maria Antão; Torsten Semmler
Journal: Curr Top Microbiol Immunol Date: 2021 Impact factor: 4.291

2. Genome-wide insights into population structure and host specificity of Campylobacter jejuni.

Authors: Lennard Epping; Birgit Walther; Rosario M Piro; Marie-Theres Knüver; Charlotte Huber; Andrea Thürmer; Antje Flieger; Angelika Fruth; Nicol Janecko; Lothar H Wieler; Kerstin Stingl; Torsten Semmler
Journal: Sci Rep Date: 2021-05-14 Impact factor: 4.379

3. Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes.

Authors: John A Lees; Minna Vehkala; Niko Välimäki; Simon R Harris; Claire Chewapreecha; Nicholas J Croucher; Pekka Marttinen; Mark R Davies; Andrew C Steer; Steven Y C Tong; Antti Honkela; Julian Parkhill; Stephen D Bentley; Jukka Corander
Journal: Nat Commun Date: 2016-09-16 Impact factor: 14.919

4. Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress.

Authors: Patricia Hingston; Jessica Chen; Bhavjinder K Dhillon; Chad Laing; Claire Bertelli; Victor Gannon; Taurai Tasara; Kevin Allen; Fiona S L Brinkman; Lisbeth Truelstrup Hansen; Siyun Wang
Journal: Front Microbiol Date: 2017-03-08 Impact factor: 5.640

Review 5. The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.

Authors: Sion C Bayliss; David W Verner-Jeffreys; Kerry L Bartie; David M Aanensen; Samuel K Sheppard; Alexandra Adams; Edward J Feil
Journal: Front Microbiol Date: 2017-02-03 Impact factor: 5.640

6. Bacterial Genome-Wide Association Identifies Novel Factors That Contribute to Ethionamide and Prothionamide Susceptibility in Mycobacterium tuberculosis.

Authors: Nathan D Hicks; Allison F Carey; Jian Yang; Yanlin Zhao; Sarah M Fortune
Journal: mBio Date: 2019-04-23 Impact factor: 7.867

7. Panton-Valentine leucocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial GWAS.

Authors: Bernadette C Young; Sarah G Earle; Sona Soeng; Poda Sar; Varun Kumar; Songly Hor; Vuthy Sar; Rachel Bousfield; Nicholas D Sanderson; Leanne Barker; Nicole Stoesser; Katherine Rw Emary; Christopher M Parry; Emma K Nickerson; Paul Turner; Rory Bowden; Derrick W Crook; David H Wyllie; Nicholas Pj Day; Daniel J Wilson; Catrin E Moore
Journal: Elife Date: 2019-02-22 Impact factor: 8.140