Literature DB >> 27572648

A multi-omic future for microbiome studies.

Janet K Jansson1, Erin S Baker1.   

Abstract

Mesh：

Year:  2016        PMID： 27572648     DOI： 10.1038/nmicrobiol.2016.49

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN： 2058-5276            Impact factor:   17.745


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  15 in total

1.  Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.

Authors:  Rachel Mackelprang; Mark P Waldrop; Kristen M DeAngelis; Maude M David; Krystle L Chavarria; Steven J Blazewicz; Edward M Rubin; Janet K Jansson
Journal:  Nature       Date:  2011-11-06       Impact factor: 49.962

2.  Enhancing bottom-up and top-down proteomic measurements with ion mobility separations.

Authors:  Erin Shammel Baker; Kristin E Burnum-Johnson; Yehia M Ibrahim; Daniel J Orton; Matthew E Monroe; Ryan T Kelly; Ronald J Moore; Xing Zhang; Roger Théberge; Catherine E Costello; Richard D Smith
Journal:  Proteomics       Date:  2015-07-03       Impact factor: 3.984

3.  Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry.

Authors:  Erin Shammel Baker; Kristin E Burnum-Johnson; Jon M Jacobs; Deborah L Diamond; Roslyn N Brown; Yehia M Ibrahim; Daniel J Orton; Paul D Piehowski; David E Purdy; Ronald J Moore; William F Danielson; Matthew E Monroe; Kevin L Crowell; Gordon W Slysz; Marina A Gritsenko; John D Sandoval; Brian L Lamarche; Melissa M Matzke; Bobbie-Jo M Webb-Robertson; Brenna C Simons; Brian J McMahon; Renuka Bhattacharya; James D Perkins; Robert L Carithers; Susan Strom; Steven G Self; Michael G Katze; Gordon A Anderson; Richard D Smith
Journal:  Mol Cell Proteomics       Date:  2014-01-08       Impact factor: 5.911

Review 4.  Diversity, stability and resilience of the human gut microbiota.

Authors:  Catherine A Lozupone; Jesse I Stombaugh; Jeffrey I Gordon; Janet K Jansson; Rob Knight
Journal:  Nature       Date:  2012-09-13       Impact factor: 49.962

5.  A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes.

Authors:  Ben P Willing; Johan Dicksved; Jonas Halfvarson; Anders F Andersson; Marianna Lucio; Zongli Zheng; Gunnar Järnerot; Curt Tysk; Janet K Jansson; Lars Engstrand
Journal:  Gastroenterology       Date:  2010-10-08       Impact factor: 22.682

6.  Accessing the soil metagenome for studies of microbial diversity.

Authors:  Tom O Delmont; Patrick Robe; Sébastien Cecillon; Ian M Clark; Florentin Constancias; Pascal Simonet; Penny R Hirsch; Timothy M Vogel
Journal:  Appl Environ Microbiol       Date:  2010-12-23       Impact factor: 4.792

7.  Structure, function and diversity of the healthy human microbiome.

Authors: 
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

8.  Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.

Authors:  Olivia U Mason; Terry C Hazen; Sharon Borglin; Patrick S G Chain; Eric A Dubinsky; Julian L Fortney; James Han; Hoi-Ying N Holman; Jenni Hultman; Regina Lamendella; Rachel Mackelprang; Stephanie Malfatti; Lauren M Tom; Susannah G Tringe; Tanja Woyke; Jizhong Zhou; Edward M Rubin; Janet K Jansson
Journal:  ISME J       Date:  2012-06-21       Impact factor: 10.302

9.  MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm.

Authors:  Yu-Wei Wu; Yung-Hsu Tang; Susannah G Tringe; Blake A Simmons; Steven W Singer
Journal:  Microbiome       Date:  2014-08-01       Impact factor: 14.650

10.  Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease.

Authors:  Alison R Erickson; Brandi L Cantarel; Regina Lamendella; Youssef Darzi; Emmanuel F Mongodin; Chongle Pan; Manesh Shah; Jonas Halfvarson; Curt Tysk; Bernard Henrissat; Jeroen Raes; Nathan C Verberkmoes; Claire M Fraser; Robert L Hettich; Janet K Jansson
Journal:  PLoS One       Date:  2012-11-28       Impact factor: 3.240
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  24 in total

1.  Quantifying human impact on Earth's microbiome.

Authors:  Stephen B Pointing; Noah Fierer; Gavin J D Smith; Peter D Steinberg; Martin Wiedmann
Journal:  Nat Microbiol       Date:  2016-08-26       Impact factor: 17.745

2.  The MPLEx Protocol for Multi-omic Analyses of Soil Samples.

Authors:  Carrie D Nicora; Kristin E Burnum-Johnson; Ernesto S Nakayasu; Cameron P Casey; Richard A White; Taniya Roy Chowdhury; Jennifer E Kyle; Young-Mo Kim; Richard D Smith; Thomas O Metz; Janet K Jansson; Erin S Baker
Journal:  J Vis Exp       Date:  2018-05-30       Impact factor: 1.355

3.  Probiotic Product Enhances Susceptibility of Mice to Cryptosporidiosis.

Authors:  Bruno C M Oliveira; Giovanni Widmer
Journal:  Appl Environ Microbiol       Date:  2018-10-17       Impact factor: 4.792

4.  A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements.

Authors:  Daniel J Orton; Malak M Tfaily; Ronald J Moore; Brian L LaMarche; Xueyun Zheng; Thomas L Fillmore; Rosalie K Chu; Karl K Weitz; Matthew E Monroe; Ryan T Kelly; Richard D Smith; Erin S Baker
Journal:  Anal Chem       Date:  2017-12-13       Impact factor: 6.986

5.  A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry.

Authors:  Xueyun Zheng; Noor A Aly; Yuxuan Zhou; Kevin T Dupuis; Aivett Bilbao; Vanessa L Paurus; Daniel J Orton; Ryan Wilson; Samuel H Payne; Richard D Smith; Erin S Baker
Journal:  Chem Sci       Date:  2017-09-28       Impact factor: 9.825

Review 6.  Recent Advances in Targeted and Untargeted Metabolomics by NMR and MS/NMR Methods.

Authors:  Kerem Bingol
Journal:  High Throughput       Date:  2018-04-18

Review 7.  Elucidation of complexity and prediction of interactions in microbial communities.

Authors:  Cristal Zuñiga; Livia Zaramela; Karsten Zengler
Journal:  Microb Biotechnol       Date:  2017-09-19       Impact factor: 5.813

Review 8.  Integrative omics of schizophrenia: from genetic determinants to clinical classification and risk prediction.

Authors:  Fanglin Guan; Tong Ni; Weili Zhu; L Keoki Williams; Long-Biao Cui; Ming Li; Justin Tubbs; Pak-Chung Sham; Hongsheng Gui
Journal:  Mol Psychiatry       Date:  2021-06-30       Impact factor: 15.992

9.  Harnessing the microbiomes of Brassica vegetables for health issues.

Authors:  Birgit Wassermann; Daria Rybakova; Christina Müller; Gabriele Berg
Journal:  Sci Rep       Date:  2017-12-15       Impact factor: 4.379

10.  Beyond Structure: Defining the Function of the Gut Using Omic Approaches for Rational Design of Personalized Therapeutics.

Authors:  Casey M Theriot
Journal:  mSystems       Date:  2018-03-06       Impact factor: 6.496
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